Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00793 ATGGCGTCAAGACCTATTGTTCCACAACAACCGAGAGGTGGGGCAGTTGCTGGGGGAGGTAAGCTGAAGGCCGGCGCGGGCGAAGGAAACAACCGGAAAGCCCTTGGAGATATTGGAAATCTAGTTACTGTTCGAGGTGTAGAAGGGAAGCCACAGCCTCAGTTCAATCGCCCTGTAACAAGGAGTTTCTGTGCGCAATTACTTGCCAACGCACAAGCAGCCGCAGCAGAGAACAATAAGGTGCAGAAACAAGTTGCAGTAATTGTTGATGGAGCCGTGGTGAAAAAAGGAGGTGCGGCTGGAAAGGCAGTTCAGAAGAAGGTTACTGTTAAGCCAAAACCAGAGGCAATAATTGAGATAAGTCCAGATACAGAGGAGGAGACTAAGAAGGAGAAATCTGAATGCCGGAAAGCATCGAGGAAAGCGTCGTCCAAGAAGAAGGCCCAGACCCTCACGTCACTCCTAACTGCTCGGAGCAAGGTTGCGTGTGGTCTAAAGGATAAACCAAAGGACCCCATTGTCAACATTGATGCAGCAGATGTTGATAATGAGTTGGCAGCAGTGGAGTATGTTGAGGATATATACAAATTTTACAAACTCACAGAGAATTCGAGCCGAGTTCATGACTACATGGACACACAGCCTGACATTAATGAGAATATGAGAGCTATCCTTGTGGACTGGTTGATAGAGGTTCACCATAAGTTTGAGCTCATGCCTGAAACTCTCTATCTCACCATCCATATAGTTGATCGATTTCTTTCGACGAAGACAATCCCGAGAAGACAGTTGCAGTTAGCAGGCGTAAGTGCCATGCTTATCGCCTCCAAATATGAGGAAATTTGGGCTCCAGAGGTGAATGACTTTGTTTGCATATCTGACCGGGCGTACACTCGAGAACAGATATTGGCGATGGAGAAAGCGATCTTGGGCAAGCTCGAATGGAGCTTAACAGTCCCTACACCCTATGTATTCCTTGCGCGTTTCATCAAAGCCGCTGTGTCCGATCAGGAGATGGAGAACATGGTATTCTTTCTGGCGGAACTAGGCATCACGCACTATGCGACGATAATGTACTGTTCATCAATGGTGGCTGCTTCAGCTGTCTATGCAGCACGGTGCACCATGAACAAGAGTCCTTTTTGGAGTGAAACTCTTAAGGTCTACACAGGTTTCTCTGAGCCTCAGCTTATGGATTGTGCTAAGCTCTTGGTCAGTTTGCACTCGGGAGCTGCGGAACATAAGCTGAAGGTGGTTTACAGGAAATACTCAAATCCTCAACGCGGCGCTGTCGCTGTACTCCCACCAGCCAAAAATCTCTTAGCTTAA 1329 0.4771 MASRPIVPQQPRGGAVAGGGKLKAGAGEGNNRKALGDIGNLVTVRGVEGKPQPQFNRPVTRSFCAQLLANAQAAAAENNKVQKQVAVIVDGAVVKKGGAAGKAVQKKVTVKPKPEAIIEISPDTEEETKKEKSECRKASRKASSKKKAQTLTSLLTARSKVACGLKDKPKDPIVNIDAADVDNELAAVEYVEDIYKFYKLTENSSRVHDYMDTQPDINENMRAILVDWLIEVHHKFELMPETLYLTIHIVDRFLSTKTIPRRQLQLAGVSAMLIASKYEEIWAPEVNDFVCISDRAYTREQILAMEKAILGKLEWSLTVPTPYVFLARFIKAAVSDQEMENMVFFLAELGITHYATIMYCSSMVAASAVYAARCTMNKSPFWSETLKVYTGFSEPQLMDCAKLLVSLHSGAAEHKLKVVYRKYSNPQRGAVAVLPPAKNLLA* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00793 442 SMART Cyclin_C_2 320 437 IPR004367 -
Eupl05g00793 442 SUPERFAMILY Cyclin-like 319 438 IPR036915 -
Eupl05g00793 442 MobiDBLite consensus disorder prediction 1 32 - -
Eupl05g00793 442 ProSitePatterns Cyclins signature. 222 253 IPR006671 -
Eupl05g00793 442 SMART cyclin_7 227 311 IPR013763 -
Eupl05g00793 442 SMART cyclin_7 324 406 IPR013763 -
Eupl05g00793 442 MobiDBLite consensus disorder prediction 120 138 - -
Eupl05g00793 442 Coils Coil 64 84 - -
Eupl05g00793 442 CDD CYCLIN_AtCycB-like_rpt1 170 315 - -
Eupl05g00793 442 FunFam G2/mitotic-specific cyclin-1 314 432 - -
Eupl05g00793 442 Pfam Cyclin, C-terminal domain 320 436 IPR004367 -
Eupl05g00793 442 Gene3D - 193 432 - -
Eupl05g00793 442 SUPERFAMILY Cyclin-like 182 317 IPR036915 -
Eupl05g00793 442 FunFam G2/mitotic-specific cyclin 206 313 - -
Eupl05g00793 442 Gene3D - 207 318 - -
Eupl05g00793 442 CDD CYCLIN_AtCycB-like_rpt2 320 436 - -
Eupl05g00793 442 Pfam Cyclin, N-terminal domain 193 317 IPR006671 -
Eupl05g00793 442 PIRSF Cyclin_A_B_D_E 2 442 IPR046965 GO:0016538|GO:0044772
Eupl05g00793 442 PANTHER CYCLINS 135 425 IPR039361 -
Eupl05g00793 442 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00793 Eupl-Chr5 28388919 28392802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00793 1 441 Core Cell Cycle Gene Families AT4G37490 52.667 2.02e-143 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00793 K21777 - nnu:104607861 610.142