Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00779 ATGGAAGACCCTGTGAGTTTGTACCTGAATCTCGATCATTGGCGAGAATCAGAATTCGAAGACATCCAAGACTCTCCCTCTTCTTCTCTTTCTCCTTCCTCAGAGACGTTCATGGTGGGTTTCGTGATCGTCAATATCGTAGGTCTTCAACACTACTCTGGCACCATCAGTGGCCGAGAGATGGTCGGTCTGGTTCGGGAACCCCTAAACCCTCATGACTCCAACGCCATCAAAGTCCTCAATACCCGAACCATCCAAGTCGGATACATCGAGCGGTCATCAGCCGCAGTTCTCGCTCCCCTTATTGACGATAGTCTGATTACCGTTGAAGGCATTGTGCCAAACACACCCGGAAGCAAAAACCGGTACAAACTCCCTTGCCAAATTCACATATTTGGACGGATCGAAGAGTTCCAGACGGTTCGTTCGGCGATTTTGCAAGGTGGGTTGCTTCTCATTTCTGACTCAGATCCTTCATTTACTCTCTCTGAGTCTGTTATTGTTAAAGAAAAGAAAGACAAGAAAGAAATTCGGAGCGTTGATGAGATTTTTAAGTTGGTGGGTGCGGATGAGGATAAGAAGGGTGGAAGTCACCGAGTATTGGAACCGCCCAAGGAAATTATCAAGTCGGAGCTGTTTTTGCATCAAAAGGAAGGGTTGGGGTGGTTGGTTCACAGGGAGAATTCTCATGAGTTGCCACCTTTTTGGGAAGAAAAAGATGGGGCTTATGTAAATGTGTTGACGAATTACCATACCGACAAGCGACCCGATCCTCTCAGAGGTGGGATCTTTGCCGACGACATGGGTTTGGGTAAGACCCTCACGTTGCTTTCTTTGATTGCTACTAATACACCAGGTAGAACTGTTTCTTCTTCACTTGACACTAGTGGGGGAGATATGATCAATTTAGAGGAAGAAGAGGAAACATTGTCTGTTTTGGTTGGTAAGAAGTCTAAGAAGGGCAAATTGGGTAAGGTTACGGCTTCGTGTAAAAAACGTAAAGTGAATGATACTCGTTTGGATACCAAAGGAAAGGGAGAATTAAAATGTGTAGCTGATGAAGCTTCTAGAGTTTTGGGTCCGAGAACAACACTAGTCGTCTGTCCTCCATCAGTATTTTCAACATGGATAACGCAGCTAAGTGAACATACAAGATCTGGTAGCTTTAAGGTGTACATGTATTACGGAGAACGGACTAGAGATGTTGATGAGCTTCAAAGTTTTGATCTAGTGTTGACAACTTACAGTACTTTAGCTGCTGAAGCACATTGGGAAGAGTCGCCTATGAAGAAGATAGAGTGGTTGCGAGTTATTTTGGATGAGGCACATTTGATTAAGAACGTGGCAGCCCAACAGAGTAAAGCTGTCATTGCTTTGAAGGCTAAGAGGAGATGGGTCGTTACGGGGACACCCATTCAGAATGGTTCATTCGATTTGTTTTCTCTCATGGCTTTCTTGAGGTTTGAGCCTTTTTCAATCAAGAGCTATTGGCAGAGCCTCGTGCAACGTCCACTTGATCAAGGAAATAATAGTGGTCTCTCACGTCTGCAGGTCTTAATGGCAACCATTTCTTTGCGAAGAATTAAAGACAAGGGCTTGGTTGGACTGCCACCTAAAACTTTAGAAACTTGTTTTGTGGAGCTCTCAGCTGAAGAACGTGAGCAGTATGACCAAATGGAAGCAGAGGCCAAGAATGTGGTTCAGGATTACATCCGCGTCGGCAGTGTAATGCGCAACTATTCAACTGTACTTAGTATTCTTTTACGACTCCGCCAGATCTGTAATGATGTGACCTTGTGCCCTTCGGATATTAGATCGTTGCTTCGGTCCAACAATATTGAAGATGTATCCAATAACCCGGAATTGCTAAAAAAGATGGTCTCAATGCTACAAGATGGAGATGACTTTGATTGCCCGATTTGCATCTCTCCACCAACCGCTACAATCATCACATGTTGTGCTCACATTTTTTGCCGAGCCTGCATATTAAAAGCCCTCAAACGCCTGAATGCCTGCTGTCCCCTCTGCCGCCACCCCCTTTCCGAATCAGACCTCTTTTCAGCGCCACCAGAACCTTGCGACAGAGACAATCCGGGGATCCCCTCATCTGGGGGAAATACATCTTCCAAAGTATCTGCCTTGTTGAAACTCTTGGTGACATCCAGGGATGAACACCCTTCTACGAAGTCCGTGGTGTTCTCACAGTTCAGAAAGATGTTGATCTTACTTGAAGAACCTCTGAAGGCTGCTGGTTTCGAGATCTTGAGATTGGATGGGTCGATGAGTGCAAAGAGGAGAGCTCAAGTGATCAAAGAATTTGGAGATCATAGTCCAGGTGGTGCCACAGTGTTGTTGGCAAGTCTTAAGGCTTCAGGTGCAGGGATAAATCTAACGGCAGCATCGAGAGTATACTTGTTGGAGCCATGGTGGAATCCAGCAGTTGAGGAACAGGCCATGGACCGGGTCCATCGGATTGGGCAGAAGGAGGACGTGAAGATTGTGAGGCTGATCGCCAGGAATAGCATCGAAGAAAGGATATTGGAATTACAGGAAAGGAAGATGAAGTTGGCGAAGGAGGTTTTTGGGAGGAGGTGTGGGAAGGATCGGAGACAAATAAATGTGGAAGACCTCCGCACCCTCATGTCCTTGTGA 2652 0.4589 MEDPVSLYLNLDHWRESEFEDIQDSPSSSLSPSSETFMVGFVIVNIVGLQHYSGTISGREMVGLVREPLNPHDSNAIKVLNTRTIQVGYIERSSAAVLAPLIDDSLITVEGIVPNTPGSKNRYKLPCQIHIFGRIEEFQTVRSAILQGGLLLISDSDPSFTLSESVIVKEKKDKKEIRSVDEIFKLVGADEDKKGGSHRVLEPPKEIIKSELFLHQKEGLGWLVHRENSHELPPFWEEKDGAYVNVLTNYHTDKRPDPLRGGIFADDMGLGKTLTLLSLIATNTPGRTVSSSLDTSGGDMINLEEEEETLSVLVGKKSKKGKLGKVTASCKKRKVNDTRLDTKGKGELKCVADEASRVLGPRTTLVVCPPSVFSTWITQLSEHTRSGSFKVYMYYGERTRDVDELQSFDLVLTTYSTLAAEAHWEESPMKKIEWLRVILDEAHLIKNVAAQQSKAVIALKAKRRWVVTGTPIQNGSFDLFSLMAFLRFEPFSIKSYWQSLVQRPLDQGNNSGLSRLQVLMATISLRRIKDKGLVGLPPKTLETCFVELSAEEREQYDQMEAEAKNVVQDYIRVGSVMRNYSTVLSILLRLRQICNDVTLCPSDIRSLLRSNNIEDVSNNPELLKKMVSMLQDGDDFDCPICISPPTATIITCCAHIFCRACILKALKRLNACCPLCRHPLSESDLFSAPPEPCDRDNPGIPSSGGNTSSKVSALLKLLVTSRDEHPSTKSVVFSQFRKMLILLEEPLKAAGFEILRLDGSMSAKRRAQVIKEFGDHSPGGATVLLASLKASGAGINLTAASRVYLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIARNSIEERILELQERKMKLAKEVFGRRCGKDRRQINVEDLRTLMSL* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00779 883 Pfam SNF2-related domain 215 598 IPR000330 GO:0005524|GO:0140658
Eupl05g00779 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 881 IPR027417 -
Eupl05g00779 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 620 689 IPR013083 -
Eupl05g00779 883 SMART HIRAN_2 39 135 IPR014905 GO:0003676|GO:0008270|GO:0016818
Eupl05g00779 883 CDD RING-HC_HLTF 633 685 - -
Eupl05g00779 883 Pfam HIRAN domain 40 133 IPR014905 GO:0003676|GO:0008270|GO:0016818
Eupl05g00779 883 CDD SF2_C_SNF 708 837 - -
Eupl05g00779 883 ProSiteProfiles Zinc finger RING-type profile. 638 677 IPR001841 -
Eupl05g00779 883 Gene3D - 347 528 IPR038718 -
Eupl05g00779 883 ProSitePatterns Zinc finger RING-type signature. 653 662 IPR017907 -
Eupl05g00779 883 Pfam Helicase conserved C-terminal domain 710 826 IPR001650 -
Eupl05g00779 883 SMART helicmild6 741 826 IPR001650 -
Eupl05g00779 883 SUPERFAMILY RING/U-box 624 683 - -
Eupl05g00779 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 527 IPR027417 -
Eupl05g00779 883 SMART ring_2 638 676 IPR001841 -
Eupl05g00779 883 Gene3D - 183 295 IPR038718 -
Eupl05g00779 883 Pfam Zinc finger, C3HC4 type (RING finger) 638 676 IPR018957 GO:0046872
Eupl05g00779 883 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 489 IPR014001 -
Eupl05g00779 883 Gene3D - 537 883 IPR027417 -
Eupl05g00779 883 Coils Coil 549 569 - -
Eupl05g00779 883 Coils Coil 839 859 - -
Eupl05g00779 883 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 713 878 IPR001650 -
Eupl05g00779 883 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 170 881 - -
Eupl05g00779 883 Gene3D - 32 152 - -
Eupl05g00779 883 SMART ultradead3 208 496 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00779 Eupl-Chr5 28171265 28186526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00779 16 883 RAD5 or RAD16-like Gene Family AT5G05130 63.740 0.0 1102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl05g00779 SNF2_N 1e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00779 K15711 - nnu:104607850 1277.31