Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00768 ATGCATCCGGAAAACTCGCTGGGAAGTTCAGAACAGTACCGGATTTTGGCCGGAAACACTGGCATGGATATGGGATCGTACGGAATTCCCGTCAATTATGAATTTCCGAGTATCACGAGCTTCTCAGGTTCTTCGTTTTACCCCTTCGACATGTCTGGAATTACGGAGACGCCACAAGCTCGAGCTCAAGCTGCTTTGAGGAACCACAAGGAGGCAGAGAAACGGCGAAGAGAGAGAATCAATTCCCATCTCGATAAGCTTCGATGCCTTCTTCCCTGCAATTCGAAAACGGACAAAGCTTCACTGTTAGCGAAGGTGATCGAACACGTTAAAGAGTTGAAACAGCAAACCTCGGAGATCCCCGAACTCGAGCACTTCCCGTCGGAAACCGATGAGATCACTGTATTTTCCGGTGATTTTTCGTGCGACGGGAGATCGGTTATGAAAGCGTCTTTATGTTGCGAAGATCGATCAGATCTTTTGCCGGATCTGATAGAGACACTGAAATCTCTCCGTCTGAAGACTCTAAGAGCGGAAATGGCGACGTTAGGAGGGAGAGTCCGAAACGTTCTATTCGTAGCCGGAGAAGAAGAAGATCAAGGCGACGAATCAATTGGTTTCTTACGCGACGCCTTGAAAACTTTGGTTGAACGATCGAGTTCAGACGATCGTTTTAAAAGGCGACGGATCTTAGATCGGAGAACAACCTGA 711 0.4782 MHPENSLGSSEQYRILAGNTGMDMGSYGIPVNYEFPSITSFSGSSFYPFDMSGITETPQARAQAALRNHKEAEKRRRERINSHLDKLRCLLPCNSKTDKASLLAKVIEHVKELKQQTSEIPELEHFPSETDEITVFSGDFSCDGRSVMKASLCCEDRSDLLPDLIETLKSLRLKTLRAEMATLGGRVRNVLFVAGEEEDQGDESIGFLRDALKTLVERSSSDDRFKRRRILDRRTT* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00768 236 Gene3D - 60 125 IPR036638 GO:0046983
Eupl05g00768 236 CDD bHLH_AtAIG1_like 59 135 - -
Eupl05g00768 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 124 IPR036638 GO:0046983
Eupl05g00768 236 SMART finulus 70 119 IPR011598 GO:0046983
Eupl05g00768 236 PANTHER TRANSCRIPTION FACTOR BHLH30 56 232 IPR045847 GO:0003700|GO:0006355
Eupl05g00768 236 Pfam Helix-loop-helix DNA-binding domain 68 113 IPR011598 GO:0046983
Eupl05g00768 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
Eupl05g00768 236 FunFam transcription factor bHLH30 59 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00768 Eupl-Chr5 27933809 27935464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00768 1 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 58.952 6.00e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl05g00768 HLH 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00768 - - nnu:104607812 344.739