Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00728 ATGGGTATGGTCGGTCTCCGCGGCGACGTCCTCCTTGTCGCTCCCGCTTCATCTTTCCACCACCACCCCCACGACTCCATCATCTCTGACCACCACCCCATTAACAATTCTAACGCCGCCACCGCTCTCGGCGTTGGCGTTATCCCTCTTCTCACCGCCGCTCCTTGCCTCCCCACCTCTAATATCGGCGTCGATGATGGACACAACAACATGAATGATAATCGAAGTAGAGGTGGTGGAGGTATCCAGTTTTGGCAAAACCAGCAATCTTACCTTAAGAAATCCATGGTGATCGATCAAAATAACTCTGGAAATCTACCCAACACTGGCAGTAGTGGTGGGATGGGTGGGACGGCAACCTGTCAAGACTGTGGAAACCAGGCCAAAAAAGACTGTAGTCATCATCGGTGTAGGACTTGTTGCAAGAGTCGCGGGTTCGACTGTACTACTCATGTTAAGAGCACTTGGGTCCCGGCTGCTCGTCGCCGTGAACGTCAGCTCGTTGTTGCTGGCTCTTCCGGGTCTACTTCTGCTCTCAAGAAACCTAGGCTCCTCACATCCCAGACTTCAACGGCCTCTCATACATCCACCTCTAACACTACTCCCCCTAGAAGCTTTGATACTAGCTCTAGTCACCAAGATGCAGGTTTCCGAGAGTCATTGCCAAGGCAAGTCCATGCACCTGCTGTTTTCAAATGTGTTCGTGTGACCCCTGTCGTCGATGAGGGGGAAGACGAATATGCTTACCAGGCGGTAGTAAAGATCCATGGGCATGTATTTAAAGGATTGCTATACCATCAAGGCGTCGATGGAGGAGATGGGATTCCAAATATCTCAGACTTGCATTTGGGGGGTAATAATGGAGGTAATGGAAGGACTTGGGCTTCTTCATCGCCCCCGATTATCGACCCGCCTGATGTTTATGCCGCCTCTAGTGCTGGATTGCTTGGAGATAATATGGATTATCATACGGCTCAGGTTCTGAGGACCCCTTTTTCTGATCGACCTGGGGAGTCGGAGTGGGGGGCGTGGATTTCAAGAATCCAACAAGCTCAGTGCTATCAAGTATCAACCACCGATGGATTGTCGGAATATATACGGCCCTGA 1107 0.5104 MGMVGLRGDVLLVAPASSFHHHPHDSIISDHHPINNSNAATALGVGVIPLLTAAPCLPTSNIGVDDGHNNMNDNRSRGGGGIQFWQNQQSYLKKSMVIDQNNSGNLPNTGSSGGMGGTATCQDCGNQAKKDCSHHRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLVVAGSSGSTSALKKPRLLTSQTSTASHTSTSNTTPPRSFDTSSSHQDAGFRESLPRQVHAPAVFKCVRVTPVVDEGEDEYAYQAVVKIHGHVFKGLLYHQGVDGGDGIPNISDLHLGGNNGGNGRTWASSSPPIIDPPDVYAASSAGLLGDNMDYHTAQVLRTPFSDRPGESEWGAWISRIQQAQCYQVSTTDGLSEYIRP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00728 368 NCBIfam putative zinc finger domain, LRP1 type 120 162 IPR006510 -
Eupl05g00728 368 MobiDBLite consensus disorder prediction 63 82 - -
Eupl05g00728 368 MobiDBLite consensus disorder prediction 168 217 - -
Eupl05g00728 368 Pfam Domain of unknown function (DUF702) 118 270 - -
Eupl05g00728 368 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 19 311 IPR007818 GO:0003700|GO:0006355
Eupl05g00728 368 MobiDBLite consensus disorder prediction 169 217 - -
Eupl05g00728 368 MobiDBLite consensus disorder prediction 62 82 - -
Eupl05g00728 368 NCBIfam LRP1 C-terminal domain 221 269 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00728 Eupl-Chr5 27168403 27176792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00728 1 307 C2H2 Transcription Factor Family AT5G12330 54.232 1.53e-83 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Eupl05g00728 DUF702 5.2e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00728 - - nnu:104606079 411.764