Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00712 ATGTTGCGGACGGAGAGGATGACAACGGATCTTACCAGGACAGGTCCTGTCGAAAGGGACATTGAACAGGCCATTACTGCTCTTAAGAAGGGAGCATATTTGCTCAAGTATGGACGTAGAGGGAAGCCCAAGTTTTGCCCCTTCAGGCTGGCAAATGATGAATCTGTTCTAGAATGGTTCTCTGGGAAAGAGGAGAAACAACTTAAACTAAGCCATGTGTCCAGAATTATACCTGGGCAGCGCACTGCAATTTTTCAGAGGTACCCACGGCCCGAGAAAGAATACCAGTCATTTTCTCTTATATATAGTGACAGGTCACTCGATTTGATTTGCAAGGATAAAGATGAAGCTGAGGTCTGGTTTGTTGGTCTAAAAGCATTAATTTCACGTGGTCATCACCGGAAATGGAGAACAGAATCAAGAAGTGATGGAGTTTCATCTGAAGCAAATAGTCCTAGAACATACACCCGAAGAAGTTCTCCATTGAGTTCTCCATTTGGCAGTGGTGATAGCTTGCAAAAGGATGGCGGAGATGCCCTTCGTCTTCATAGTCCATATGAAAGCCCCCCTAAAAATGGCCTGGATAAGGCATTTCCTGACGTGGTATTATATGCTGTACCTCCCAAGGGTTTCTTCCCCTCAGATTCTGCTAGTGCCTCAGTCCATTCTTTGTCATCAGGAGGTTCAGATAGCATGAATGGGCATATGAAGGGCATTGTAATGGATGCTTTTAGAGTAAGTCTATCAAGTGCTGTTAGCTCATCAAGTCAAGGGTCCGGTCATGATGATGGTGATGCTTTAGGGGATGTTTTCTTTTGGGGGGAAGGCACTGGGGATGGTGTTCTGGGTGGTGGCATTCATAGAGTTGGAAGCTCTTCTGGTGTTAAAATGGATTCACTTGTGCCTAAAGCCTTGGATTCTGCAGTAGTACTTGATGTTCAGAATATAGCTTGTGGCGGACGACATGCTGCTTTAGTTACCAAACAAGGAGAGATTTTCTCTTGGGGGGAAGAATCAGGAGGCAGGCTTGGCCGTGGTGTAGATTCTGATGTGTCACAACCAAAGCTTATTGATGCTCTTGGTAATACGAACATTGAACTTGTAGCATGTGGAGAGTACCACACCTGTGCTGTAACACTGTCCGGAGATCTGTACACATGGGGTGATGGTACTTACAACTTTGGGCTCCTTGGCCATGGAAATGAAGTGAGTCACTGGGTCCCAAAAAGGGTGAATGGACCTTTGGAGGGTATACACGTGTCGTCCATTTCCTGTGGACCTTGGCATACAGCTGTTGTAACCTCTGCTGGGCAATTGTTTACTTTTGGTGATGGAACTTTTGGTGTGCTGGGCCATGGAGATCGGAGAAGTGTGTCAATACCCAGGGAAGTGGAATCTCTTAAGGGGCTCCGCACTGTCCGGGCAGCTTGTGGTGTTTGGCATACAGCTGCAGTTGTAGAAGTGATGGTCGGGACTTCAAGTTCCAGCAACTGCTCTTCGGGGAAGCTGTTTACATGGGGAGATGGGGATAAAGGTCGACTTGGACATGGGGATAAGGAATCAAAACTTGTGCCTACTTGTGTCGCTGCTCTGGTTGAACCCAACTTTTGTCAAGTTGCCTGTGGGCACAGCCTGACAGTTGCACTTACAACCTCAGGCCATGTCTACACAATGGGTAGTTCTGTTTATGGTCAGCTTGGAAATCCTCAAGCTGATGGGAAGCTCCCCACCCGTGTTGAAGGAAAGCTCTTGAAGAATTTTGTGGAGGAGATAGCTTGTGGTGCTTATCATGTTGCAGTTTTAACTTCAAGAACTGAAGTTTATACTTGGGGCAAGGGAGCAAATGGTCGATTAGGTCATGGGGATACAGATGATAAACACTCCCCTTCATTAGTTGAAGCTTTGAAAGACAAACAAGTCAAAAGTATTGCTTGTGGTACTAATTTTACTGCAGCTATCTGTCTTCATAAGTGGGTCTCTGGTGTTGATCAATCTATGTGTTCTGGTTGCCGCCTGCCGTTCAATTTCAAAAGAAAACGACATAATTGCTATAATTGTGGGCTTGTTTTTTGTCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCTTCTATGGCACCAAATCCTAACAAACCTTATCGAGTCTGTGATAACTGCTTTGGTAAACTAAGGAAAGCCATTGAGACTGAATCTACATCTCACTTTTCTGTGAATAGAAGAGGAAGTATGAACCAGGGTCTGAATGAGCTGGTCGAAAAGGATGAAAAGTTGGAAACACGATCTCATGTGCAACTTGCTAGATTTTCTTCAATGGAATCCTTTAAGCAAGTGGAAAGCAGATCTTCCAAGAGAAACAAGAAGTTAGAATTTAATAGCAGCCGTGTCTCACCTATTCCAAGTGGAAGCTCTCAATGGGGAGCACTTAACATCTCTAAATCTTTCAATCCAGTATTTGGGTCTTCTAAAAAGTTTTTCTCAGCTTCTGTTCCTGGATCAAGAATCGTTTCTCGAGCAACCTCACCGATATCAAGACGACCTAGCCCACCTCGTTCAACAACACCAACTCCGACTCTGGCAGGACTGACTTCTCCAAAAATCGTTGTGGATGAAGCTAAAAGGACAAACGATAGCCTCAGCCAAGAGGTTCTTCAATTAAGAGCACAGGTGGAAAATCTCACTCGTAAAGCCCAACTTCAAGAAGTTGAGCTCGAAAGAACAACCAAACAGCTGAAGGAGGCAATAGTAATTGCAGGGGAAGAGACTTCGAAATGCAAAGCAGCGAAGGAAGTGATTAAGTCACTTACTGCCCAATTGAAGGACATGGCCGAAAGATTACCTGTGGGAGCAATGCGGAACAGCAAGCCACCTCCCTTTGTTTCCTTTAGTTCCACTCCTGCTTCCAGCGATGTTTCTGCTGTCCCCATTGACCAATTGAGCAGTCAAATCATTTCCCATGAACCTGATTCAAATGGATCAAACAGCCTGGTGCTTTCCAATGGGTCAAGCACCACTAGTAACCGTAATTCAAGTCACAATAGACCGGGCCACTCCGAAGCAACAAGGAATGGAGTCAGAACGATGGAAGGAGAAACCAATCAGGAGACTGAGAGGGTTGAGCAAGATGAGCTTGGTGTGTACATCACACTTACATCTTTACCCGGGGGTGTCACAGATCTCAGGCGAGTCCGCTTCAGTCGGAAGCGGTTTAGCGAGCAACAAGCAGAACAATGGTGGGCAGAGAACCGGGCAAGGGTACATGAGCAGTACAATGTGCGCATGGTTGACAAGTCCAGTGTTGGCCTCGGAAGTGAGGCTTAG 3315 0.4573 MLRTERMTTDLTRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLANDESVLEWFSGKEEKQLKLSHVSRIIPGQRTAIFQRYPRPEKEYQSFSLIYSDRSLDLICKDKDEAEVWFVGLKALISRGHHRKWRTESRSDGVSSEANSPRTYTRRSSPLSSPFGSGDSLQKDGGDALRLHSPYESPPKNGLDKAFPDVVLYAVPPKGFFPSDSASASVHSLSSGGSDSMNGHMKGIVMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFFWGEGTGDGVLGGGIHRVGSSSGVKMDSLVPKALDSAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGRGVDSDVSQPKLIDALGNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRRSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGTSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSSVYGQLGNPQADGKLPTRVEGKLLKNFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDKHSPSLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFGKLRKAIETESTSHFSVNRRGSMNQGLNELVEKDEKLETRSHVQLARFSSMESFKQVESRSSKRNKKLEFNSSRVSPIPSGSSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLAGLTSPKIVVDEAKRTNDSLSQEVLQLRAQVENLTRKAQLQEVELERTTKQLKEAIVIAGEETSKCKAAKEVIKSLTAQLKDMAERLPVGAMRNSKPPPFVSFSSTPASSDVSAVPIDQLSSQIISHEPDSNGSNSLVLSNGSSTTSNRNSSHNRPGHSEATRNGVRTMEGETNQETERVEQDELGVYITLTSLPGGVTDLRRVRFSRKRFSEQQAEQWWAENRARVHEQYNVRMVDKSSVGLGSEA* 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00712 1104 MobiDBLite consensus disorder prediction 143 170 - -
Eupl05g00712 1104 MobiDBLite consensus disorder prediction 982 1028 - -
Eupl05g00712 1104 Coils Coil 867 908 - -
Eupl05g00712 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 605 656 IPR000408 -
Eupl05g00712 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 382 436 IPR000408 -
Eupl05g00712 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 552 IPR000408 -
Eupl05g00712 1104 Coils Coil 923 943 - -
Eupl05g00712 1104 Gene3D - 235 391 IPR009091 -
Eupl05g00712 1104 Gene3D - 392 490 IPR009091 -
Eupl05g00712 1104 PRINTS Chromosome condensation regulator RCC1 signature 382 398 IPR000408 -
Eupl05g00712 1104 PRINTS Chromosome condensation regulator RCC1 signature 423 439 IPR000408 -
Eupl05g00712 1104 PRINTS Chromosome condensation regulator RCC1 signature 542 560 IPR000408 -
Eupl05g00712 1104 PRINTS Chromosome condensation regulator RCC1 signature 600 621 IPR000408 -
Eupl05g00712 1104 PRINTS Chromosome condensation regulator RCC1 signature 332 348 IPR000408 -
Eupl05g00712 1104 PRINTS Chromosome condensation regulator RCC1 signature 439 453 IPR000408 -
Eupl05g00712 1104 PRINTS Chromosome condensation regulator RCC1 signature 313 326 IPR000408 -
Eupl05g00712 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 423 433 IPR000408 -
Eupl05g00712 1104 MobiDBLite consensus disorder prediction 835 861 - -
Eupl05g00712 1104 FunFam Putative E3 ubiquitin-protein ligase HERC1 663 731 - -
Eupl05g00712 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 437 488 IPR000408 -
Eupl05g00712 1104 MobiDBLite consensus disorder prediction 137 193 - -
Eupl05g00712 1104 MobiDBLite consensus disorder prediction 947 968 - -
Eupl05g00712 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 330 378 IPR000408 -
Eupl05g00712 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 437 485 IPR000408 -
Eupl05g00712 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 606 653 IPR000408 -
Eupl05g00712 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 552 601 IPR000408 -
Eupl05g00712 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 500 549 IPR000408 -
Eupl05g00712 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 381 433 IPR000408 -
Eupl05g00712 1104 Gene3D - 491 668 IPR009091 -
Eupl05g00712 1104 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 661 723 IPR017455 -
Eupl05g00712 1104 SMART fyve_4 655 724 IPR000306 GO:0046872
Eupl05g00712 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 316 326 IPR000408 -
Eupl05g00712 1104 Gene3D - 20 136 IPR011993 -
Eupl05g00712 1104 MobiDBLite consensus disorder prediction 982 1035 - -
Eupl05g00712 1104 FunFam PH, RCC1 and FYVE domains-containing protein 1 239 490 - -
Eupl05g00712 1104 CDD PH_PLC_plant-like 19 129 - -
Eupl05g00712 1104 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 939 - -
Eupl05g00712 1104 Pfam FYVE zinc finger 657 723 IPR000306 GO:0046872
Eupl05g00712 1104 SUPERFAMILY FYVE/PHD zinc finger 657 731 IPR011011 -
Eupl05g00712 1104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 729 IPR013083 -
Eupl05g00712 1104 MobiDBLite consensus disorder prediction 776 801 - -
Eupl05g00712 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 553 604 IPR000408 -
Eupl05g00712 1104 Pfam Transcription factor regulating root and shoot growth via Pin3 1033 1088 IPR013591 -
Eupl05g00712 1104 CDD FYVE_like_SF 666 719 - -
Eupl05g00712 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 329 IPR000408 -
Eupl05g00712 1104 Pfam Transcription factor BRX N-terminal domain 918 954 IPR027988 -
Eupl05g00712 1104 SUPERFAMILY RCC1/BLIP-II 268 658 IPR009091 -
Eupl05g00712 1104 SUPERFAMILY PH domain-like 20 128 - -
Eupl05g00712 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 475 485 IPR000408 -
Eupl05g00712 1104 ProSiteProfiles BRX domain profile. 1034 1089 IPR013591 -
Eupl05g00712 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 381 IPR000408 -
Eupl05g00712 1104 FunFam PH, RCC1 and FYVE domains-containing protein 1 491 662 - -
Eupl05g00712 1104 Pfam Unstructured region between BRX_N and BRX domain 959 1026 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00712 Eupl-Chr5 26803849 26834476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00712 927 1098 Major Intrinsic Protein MIP AT1G31880 32.065 7.51e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00712 - - msin:131251217 1899.02