Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00706 ATGTTTCAGGATTGTAGGATTGTAGGATCAGGGTCTTGCCTCTTTGATCTCTTTTCTTCAGACCAGTCAACAAGTTGGGGTTGCCGGAAGGAAGACCCAACACCCCCTATGGGTCCACTAAGAAGGCTGGAAGATCTGTTGGGTCAATCAGCCAATAGGTTTTGTGCAGATTGTGGCTCTCTGGATCCAAAATGGGTGTCTATAAGTCTTGGAGTATTTATTTGCATCAAGTGCTCTGGTGTTCATAGAAGCCTTGGAGTGCATATATCAAAGGTCTTGTCGGTGAAGCTAGATGAATGGACAGATGACCAAGTTGATTCTTTGGTTGATATGGGTGGAAACGCTACAGCAAACATGAAATATGAAGCTTTCCTTCCAGATAACGTCAGAAAGCCAAAACCAGATTCCCCTATGGAGGAGCGCTCTGATTTCATCAGGAGAAAATATGAGCTGCAACAGTTTTTGAACTCTAATGTACAGAGTGTCTTCTCCCTTCCATCCACAAACTTGGGCTCACCATCCAGGCAGAGCAGTTATTCAGGCAATGGTAACTCTGGTTCACCTCAATACAAGAAATCGTATGAGAAACAACCCACCGGCAGCCGTATTGGGCAAGCATTTCGTAACAGCTGGAGAAGAAAGGAGTCTGAAAACAAGGCCTCAAAGAAAACCAACTCAACCATCAACTCATCGCCGGGTATGGTCGAATTCATTGGATTGATAAAGGTCAATGTTGTGAGAGGCACCAAACTAGCTGTCCGGGATGTGGTGACTAGTGATCCTTATGTCATCCTCACGCTAGGGCACCAATCAATGAAGACGCGTGTGATAAAGAGCAATCTGAATCCAGTCTGGAATGAAAGGTTAATGCTATCAATTCCAGAACCCATTCCGCCTCTAAAGTTGCAAGTGTATGACAAGGATACATTCACAACAGATGATCACATGGGAGAGGCTGAGATTGACATCCAACCCTTGCTCGCTGCTGCCAAAGCCTATGAGAACTCCACCATCACTGAGTCCATGCAGCTCGGAAAATGGCTAGCAACCAAAGACAACACCCTAGTACAAGACAGTATTATCAACCTGGTAGATGGGAAGGTAAAGCAAGAAATCAAGCTCAGGCTGCAGAATGTCGAACGGGGAGTGTTAGAGATTGAGCTCGAATGTGTTCCTCTGAGTCAATAG 1188 0.4537 MFQDCRIVGSGSCLFDLFSSDQSTSWGCRKEDPTPPMGPLRRLEDLLGQSANRFCADCGSLDPKWVSISLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTDDQVDSLVDMGGNATANMKYEAFLPDNVRKPKPDSPMEERSDFIRRKYELQQFLNSNVQSVFSLPSTNLGSPSRQSSYSGNGNSGSPQYKKSYEKQPTGSRIGQAFRNSWRRKESENKASKKTNSTINSSPGMVEFIGLIKVNVVRGTKLAVRDVVTSDPYVILTLGHQSMKTRVIKSNLNPVWNERLMLSIPEPIPPLKLQVYDKDTFTTDDHMGEAEIDIQPLLAAAKAYENSTITESMQLGKWLATKDNTLVQDSIINLVDGKVKQEIKLRLQNVERGVLEIELECVPLSQ* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00706 395 PRINTS HIV Rev interacting protein signature 71 88 IPR001164 GO:0005096
Eupl05g00706 395 PRINTS HIV Rev interacting protein signature 52 71 IPR001164 GO:0005096
Eupl05g00706 395 PRINTS HIV Rev interacting protein signature 92 113 IPR001164 GO:0005096
Eupl05g00706 395 Gene3D C2 domain 238 391 IPR035892 -
Eupl05g00706 395 CDD C2_ArfGAP 238 382 - -
Eupl05g00706 395 ProSiteProfiles C2 domain profile. 222 337 IPR000008 -
Eupl05g00706 395 SUPERFAMILY ArfGap/RecO-like zinc finger 42 156 IPR037278 -
Eupl05g00706 395 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 37 395 IPR044518 GO:0005096|GO:0005543
Eupl05g00706 395 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 236 330 IPR035892 -
Eupl05g00706 395 MobiDBLite consensus disorder prediction 166 227 - -
Eupl05g00706 395 Pfam C2 domain 240 328 IPR000008 -
Eupl05g00706 395 FunFam stromal membrane-associated protein 1 isoform X1 36 160 - -
Eupl05g00706 395 ProSiteProfiles ARF GTPase-activating proteins domain profile. 40 162 IPR001164 GO:0005096
Eupl05g00706 395 SMART arf_gap_3 41 162 IPR001164 GO:0005096
Eupl05g00706 395 Gene3D Arf GTPase activating protein 36 163 IPR038508 -
Eupl05g00706 395 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 237 395 - -
Eupl05g00706 395 MobiDBLite consensus disorder prediction 166 206 - -
Eupl05g00706 395 SMART C2_3c 240 335 IPR000008 -
Eupl05g00706 395 Pfam Putative GTPase activating protein for Arf 42 156 IPR001164 GO:0005096
Eupl05g00706 395 CDD ArfGap 43 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00706 Eupl-Chr5 26664084 26715473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00706 41 395 C2H2 Transcription Factor Family AT4G05330 52.394 2.11e-129 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00706 K12486 - psom:113324673 554.288