Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00682 ATGCATCAGAAGAAGGATTCTCGAAGTTTCTCAGAGCTCCTTTCGGAGTTACTAGCATCGGCCGATGAAGTTACTTCTCTGGCAAAAGACTCTGAGACTGAAAGAGAGATTTTGACTGAATTCGCTGTGTTTATTGAGAAATTCACACCTATCCTTAATGATTTGAGGGATAATAAGGTTATGGATACATCTCCAATGCGAAAGGCGGTCGAATCGCTAGAATCAGAGTTCAGACGCGCTAAGAATTTGATTATCAACTCCAATTCAAGATCCTCGGCTAAACAGATCGAAGAAGTTACTCACGACCTCGGTAGATGTTTAGGCCTTGTGCTTCTGGCGAGTCTAGATGTGTCGGTTGAAATTAAAGAAAAGATTGGAGCTTTGCACAAAGAAATGATGAATGCGAGGTTTGCTGTCACTCTCGGAAATGAATTGGAGATAGTGCAAGATTTGGAATTGCAGGAGGAAGAGGAGCAGGATAGAATCAGTCTTGATGTTGATGATGTTACTTTGCAGCTTAAGTATGGTAAGGATGAAGAATTCAAATTTGCACTCCTGGGACTAAGCACACTAATTCAGGATAAGTTGATTCGGAATGAATGGATAAATAATGAAGGTATTATTCCAATTTTGTTGAATCGATTGGGTTCCAGTAAGCAGAATAACAGGTTGACCATAATCTTGATACTGAGAAGCCTAGCATCCGAGAACGATGAAAACAAGGAGAAGATGTCGGATGCTGGGTCTTTATCGACGTTGGTGCGATCTTTGGCACGGGATGTTGAAGAGAGCAGAGAAGCTGTTGGGCTGTTGCTGGATCTGTCAGAGATCCCATCAGTTCGCCGGCGGATTGGCAGAATCCAAGGGTGTATTGTTATGTTGGTTGCCCTGCTCAATGGAGACGACCCTCTTGCTTCACGTGATGCAAGGAAGTTGTTGAGTGCTTTGTCGAGCAACACTCAGGATGTGCTTCATATGTCAGAGGCCGGCTACTTCAAGCCACTAGTGCAGCACCTTAAGGAAGGTTCTGATATGAGTAAGATTCTCATGGCAACGGCACTTTCAAGGATGGAGCTCACAGACCAAAGCAGAGCTGCCCTTGGAGAAGAAGGATCAATCGAACCCCTTGTCAAGATGTTTAGTTCAGGGAAGCTTGAAGCAAAGCTATCCGCTTTGGGTGCATTGCAGAACCTGTCGAGTTTGACAGAGAATGTTCAGCGTTTGGTCAATTCAGGCATTGTAGCAGCTCTGCTCCAGCTTCTTTTCTCCGTGACATCTGTGCTTATGACTCTTCGGGAGCCAGCATCAGCCATCCTTGCAAGCATCGCCCAGTCCAAATCTATTCTCGTCAAACAAGATGTGGCACAGCAGATGCTCTCTCTTCTAAATCTGTCCAGTCCAGTCGTTCAGCATCACCTCTTACGTGCACTAAACAGCATCACCAGTCACTCTAGTGCATCCAAGGTTAGAGCTAAAATGAAGGAAAATGGAGCAATTCAGCTTCTCCTACCCTTCCTAACTGAGAACAAGCCTGAAATCAGGACAAATGCCTTGAATTTGCTCTACAATCTTTCGAAAGATTTACCAGGAGAGTTGTATGAACAGCTGGGTGAGACCTATCTCAACATTATAGTGAATGTTATCTCTGCATCAACTTGTGAGAATGAAAAAGCTGCCGCAGTTGCCTTGCTTTGTAATCTCCCAATTAGTGACAAGAAGGCAACAGATACACTCAAGAGGGCACATTTACTGCCCATTCTGGTCTCCTTACTGGGTTCAAGCACAGCAAATTCAATGCTCACGAGAAAGTGGTTAGTTGAGAGCATTGCAGGTGTACTAGTACGGTTTACAGTTCCTTGGGATAAGAAACTACAACAACTATCAGCAGAACAAGGGGTGATCCCTTGGCTTGTGAAGTTACTCTCAACTGGGTCACCAGTTGCCAAATCTAGAGCAGCAACTTCACTAGCTCAGCTATCACAGAATTCACTATCACTAAGCAAGTCCAGAACCTCCAGATGGTCGTGTGTTCCTCCTTCTGCGAACTCATTTTGTGAAGTTCATGATGGCTACTGCTTTATGAAAAGCTCGTTCTGTCTAGTCAAGGCTGGTGCTATCTCCGCACTAGTTCAAATTTTGGAAGGTAAAGAGAGAGATGCAGATGAAGCCGTCCTTGCGGCTCTTGCAACTCTCATGCAGGATGAGATATGGGAAAAAGGAAGCAATGCCATAGCCAAAGTGTCAGGCGTGCAGGCTATTGTAAGAGTTCTTGAAGTAGGAAACGTAAAGGCTAAAGAGAAAGCGCTTTGGATGTTGGAGAGAATTTTTAGAGTTGAGGCCCACAGAGTACAGTATGGGGAACCTGCTCAGGTAATTCTCATCGATCTTGCACAGAAGGGAGCTCCGACTTTGAAATCAACAATTGCTAAGATATTGGCACATTTTGAGCTCTTGCAGATGCAATCAAGCTACTTCTGA 2478 0.4451 MHQKKDSRSFSELLSELLASADEVTSLAKDSETEREILTEFAVFIEKFTPILNDLRDNKVMDTSPMRKAVESLESEFRRAKNLIINSNSRSSAKQIEEVTHDLGRCLGLVLLASLDVSVEIKEKIGALHKEMMNARFAVTLGNELEIVQDLELQEEEEQDRISLDVDDVTLQLKYGKDEEFKFALLGLSTLIQDKLIRNEWINNEGIIPILLNRLGSSKQNNRLTIILILRSLASENDENKEKMSDAGSLSTLVRSLARDVEESREAVGLLLDLSEIPSVRRRIGRIQGCIVMLVALLNGDDPLASRDARKLLSALSSNTQDVLHMSEAGYFKPLVQHLKEGSDMSKILMATALSRMELTDQSRAALGEEGSIEPLVKMFSSGKLEAKLSALGALQNLSSLTENVQRLVNSGIVAALLQLLFSVTSVLMTLREPASAILASIAQSKSILVKQDVAQQMLSLLNLSSPVVQHHLLRALNSITSHSSASKVRAKMKENGAIQLLLPFLTENKPEIRTNALNLLYNLSKDLPGELYEQLGETYLNIIVNVISASTCENEKAAAVALLCNLPISDKKATDTLKRAHLLPILVSLLGSSTANSMLTRKWLVESIAGVLVRFTVPWDKKLQQLSAEQGVIPWLVKLLSTGSPVAKSRAATSLAQLSQNSLSLSKSRTSRWSCVPPSANSFCEVHDGYCFMKSSFCLVKAGAISALVQILEGKERDADEAVLAALATLMQDEIWEKGSNAIAKVSGVQAIVRVLEVGNVKAKEKALWMLERIFRVEAHRVQYGEPAQVILIDLAQKGAPTLKSTIAKILAHFELLQMQSSYF* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00682 825 SUPERFAMILY ARM repeat 178 421 IPR016024 -
Eupl05g00682 825 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 413 IPR000225 GO:0005515
Eupl05g00682 825 SMART arm_5 360 400 IPR000225 GO:0005515
Eupl05g00682 825 SMART arm_5 237 276 IPR000225 GO:0005515
Eupl05g00682 825 SMART arm_5 621 661 IPR000225 GO:0005515
Eupl05g00682 825 SMART arm_5 737 777 IPR000225 GO:0005515
Eupl05g00682 825 SMART arm_5 486 526 IPR000225 GO:0005515
Eupl05g00682 825 SMART arm_5 693 733 IPR000225 GO:0005515
Eupl05g00682 825 SMART arm_5 401 444 IPR000225 GO:0005515
Eupl05g00682 825 Gene3D - 184 307 IPR011989 -
Eupl05g00682 825 Pfam Armadillo/beta-catenin-like repeat 361 400 IPR000225 GO:0005515
Eupl05g00682 825 Coils Coil 70 90 - -
Eupl05g00682 825 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 167 825 - -
Eupl05g00682 825 Gene3D - 690 817 IPR011989 -
Eupl05g00682 825 SUPERFAMILY ARM repeat 366 779 IPR016024 -
Eupl05g00682 825 Gene3D - 329 670 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00682 Eupl-Chr5 26407063 26414040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00682 202 825 U-box Gene Family AT1G20780 28.636 8.81e-47 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00682 K08332 - nnu:104608854 1172.15