Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00680 ATGAACCTGGAAGACTCCTTCAAGTCTCTCTCTCTCGATTATCTCAACCTCCTCATCAACGGCCAAGCTTTTAGTGATGTAACCTTCAGTGTAGAGGGTCGCCTTGTTCACGCACACCGGTGTATCTTAGCAGCCAGGAGCCTCTTCTTTCGCAAGTTCTTTTGTGCTCCTGACCCGCCGGCCGGACTCGACCTGGCCGGTTCAAGAATGAACTCGGCTTCGTTGTCATCGTCGCCTAGGGGGGGAAATTCTCAAGTGATCCCTGTGAATTCCGTTGGTTACGAGGTTTTCTTGTTGATGTTGCAGTTTTTGTACAGTGGACAGGTGTCGATTGTGCCTCAGAAGCACGAGCCCAGACCTAATTGTGGGGAACGGGGCTGTTGGCACACACATTGCACCTCAGCCGTTGATCTTGCTCTTGATACTCTCGCTGCTGCTAGATCGTTTGGTGTCGAGCAGCTAGCATTGCTCACTCAGAAGCAATTAGCAAGCATGGTGGAGAAGGCCTCAATTGAGGACGTGATGAAAGTTTTAATAGCTTCAAGAAAGCAAGACATGCACCAACTCTGGACTACTTGTTCACACCTTGTTGCCAAATCCGGCCTTCCACCAGAAGTCCTAGCCAAGCACCTCCCGATCGATGTCGTTGCCAAGATCGAAGAGCTCCGCCTCAAATCTTCTCTCGCTCGCCGCTCCCTCATGCCTGGCCACCACCATCATCACCATGATCTTGGCGCTGCTGCCGATCTAGAAGACCAGAAGATCCGTCGCATGCGACGCGCCCTCGACTCGTCCGACGTTGAGCTTGTTAAGCTCATGGTAATGGGGGAAGGCCTTAATCTTGATGAAGCACTTGCCCTACACTATGCTGTTGAGAATTGTAGCCGAGAAGTGGTTAAGGCCTTACTTGAGCTTGGTGCCGCGGATGTCAACTACCCGGCTGGTCCGTCTGGAAAGACCTCACTACATGTCGCTGCCGAAATGGTGTGCCCCGATATGGTCGCCGTCTTGCTCGACCACCATGCTGACCCAAATGTTCGAACTGTTGATGGAGTTACTCCCCTCGACGTGCTTCGAACACTCACCTCCGACTTCCTCTTCAAAGGGGTCGTCCCCGGACTTTCCCACATTGAGCCAAACAAGCTTAGGCTCTGTCTGGAACTTGTTCAATCAGCCGCTCTCGTCCTTTCCCGTGAAGAAGGCAGTGGTAGTGCCCCTTCCACCACTGCCATTTACCCACCCATGAACAACAACAACATGAGTAGTCTTGGTCTCGATTCAAGATTGGTTTATCTCAATCTTGGTGCAGCTGCTGCAGCTCAATTAGGGTGTAAAATGGATGAAGAAGATGATAATAATCACAATAACCAGAGAGAAGCCATGAATCGACATGGGTCCCAAGGTGGTTGTGACTCATCAATGTACCACTCTCATGATTACTAG 1443 0.5114 MNLEDSFKSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCAPDPPAGLDLAGSRMNSASLSSSPRGGNSQVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLMPGHHHHHHDLGAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPSGKTSLHVAAEMVCPDMVAVLLDHHADPNVRTVDGVTPLDVLRTLTSDFLFKGVVPGLSHIEPNKLRLCLELVQSAALVLSREEGSGSAPSTTAIYPPMNNNNMSSLGLDSRLVYLNLGAAAAAQLGCKMDEEDDNNHNNQREAMNRHGSQGGCDSSMYHSHDY* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00680 480 SUPERFAMILY Ankyrin repeat 276 360 IPR036770 -
Eupl05g00680 480 Gene3D - 247 365 IPR036770 -
Eupl05g00680 480 SMART ANK_2a 317 346 IPR002110 GO:0005515
Eupl05g00680 480 SMART ANK_2a 282 312 IPR002110 GO:0005515
Eupl05g00680 480 MobiDBLite consensus disorder prediction 459 473 - -
Eupl05g00680 480 SMART BTB_4 25 166 IPR000210 GO:0005515
Eupl05g00680 480 SUPERFAMILY POZ domain 6 195 IPR011333 -
Eupl05g00680 480 Gene3D Potassium Channel Kv1.1; Chain A 3 199 IPR011333 -
Eupl05g00680 480 ProSiteProfiles Ankyrin repeat profile. 317 349 IPR002110 GO:0005515
Eupl05g00680 480 CDD BTB_POZ_NPR_plant 8 166 - -
Eupl05g00680 480 MobiDBLite consensus disorder prediction 447 480 - -
Eupl05g00680 480 FunFam regulatory protein NPR5 isoform X1 4 199 - -
Eupl05g00680 480 Pfam Domain of unknown function (DUF3420) 201 259 IPR024228 -
Eupl05g00680 480 Pfam Ankyrin repeats (3 copies) 265 347 IPR002110 GO:0005515
Eupl05g00680 480 ProSiteProfiles Ankyrin repeat region circular profile. 317 347 - -
Eupl05g00680 480 Pfam BTB/POZ domain 16 114 IPR000210 GO:0005515
Eupl05g00680 480 ProSiteProfiles BTB domain profile. 25 113 IPR000210 GO:0005515
Eupl05g00680 480 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 480 IPR044284 GO:0099402
Eupl05g00680 480 FunFam regulatory protein NPR5 isoform X2 248 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00680 Eupl-Chr5 26371548 26373688 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Eupl05g00680 BTB 5.9e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00680 K14508 - nnu:104608860 833.172