Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00629 ATGGAACACAAGCGCCACTCAAAGAAAGGATTCTCGTACCCCAATCTCTTCAATCTTGAGTCTTTGACGAACTTTCAACTTCCCCAACAAGATGATGATTTTGATAATTATGGGAATAGTAGTCAGGATGAGAGCAGAGGTAGCCAAGGCCAAGGAGCTATGGTGGACCACGGTAATGGGATTGGGTCGGAGAGATCATCGGAGTTTGGCATGACAAGGAAGAAGAAGCGGCCCCACATTGAGGCTGGTTCAAATTCATCTGCCAGGAGAGACGCTGGCAGCAACGACGACGATGATGACAATTACAGAACCCACATTTCAGAGGAGCGGTATCATTCAATGCTCGGCGAACATGTTCAGAAGTACAGGAGGGTGAAGTTCAAAGAGTCCTCTTCCAATCCAACCTCAAACCGGATGGAAATGTCAGTTCCAAAACGTAATCTTGGTTCCAAAGGCAGAAAATTGGGGAATGAGGAGAGAGTGTTACATGGGATGGAAACCCCATCGGAGTATCTCGCCAATATTAGTCCTCTTAAGCCGCCAAACTATTATGAGGCTGATTTCGCACTGGAATATGGGGCGGATAAGTTCTCTTCCACCATTGATTCTACTTATTTGGATATTGGTGAGGGCATCACGTACAGGATTCCTCCCACTTACAATAAGCTCACGGCATCTCTGAAGTTGCCTAGCTTCTCAGATATTTGGGTGGAAGAATATTACTTAAAGGGTACCTTGGACTTGGGGACCCTGGCTGTGATGATGGCCAATGATAGAAGATTTGGTTCTCAAAGTCGATTGGGGATGGGTGAGCCTCAGCCCCAGTACAAGTCACTTCAAGCTAGATTAAAGGCCTTGTCAGCTTGTAATTCGGTCCAAAAGTTCACTCTCCAAGTCTGCGATATTGGGTTCGATTCATCTTCCATCCCAGAGGGAGCGGCTGGAGGGACACAACGGTCTATTATGTCTGAGGCAGGTCCCTTGCAGGTGTACTATGTCAAGGTCTTGGAGAAAGGAGACACATATGAGATTATTGAACGCAGGCTACCCAAGAAGCAAGTGGTGAAGAAAGATCCTGCCTTGATTGAGAAAGAGGAGATGGAGAAGATTGGGAAGGTCTGGGTGAACATTGTGAGAAGAGACATCCCAAAACATCAGAGAATTTTCTCAAATTTCCATAGGAAACAACTAATTGATGCCAAGAGGTTCTCAGAAACCTGTCAAAGAGAGGTGAAATTGAAGGTTAGTAGGTCACTCAAATTGATGAGGGGAGCAGCTATACGCACGAGGAAACTTGCTAGAGACATTCTAGTATTCTGGAAGAGAGTAGATAAGGAACAGGCAGAAGTGAGGAAGAGAGAGGAAAGAGAAGCTGCAGAAGCTCTGAAGCGTGAAGAGGAGCTCCGCGAAGCAAAGAGGCAACAACAGAGGCTCAATTTCCTATTATCACAAACAGAACTGTACAGTCATTTCATGCAGAACAAGTCAACATCTCAACCCTCCGAAGCTTTGCCTGTGGGTGATGGAGAATCAAATGATGAGGAGGCGCCAATGAGCTCTTCAGATGTTAAGCTGGGAGAGGAAGAAGATCCTGATGAAGCTGAATTGAAAAGGGAGGCTTTGAGAGCTGCCCAACATGCAGTCTCGCAGCAGAAGAAGATAATTAGTGCATTTGACAGCGAATGTTTGAAGCTGCGTCAGGCTTCTGAACCTGAAAGCCCTCCAAAGGATACCACAATTACAGGATCTAGTAACATGGACCTATTGAATCCCTCGACTATGCCTATTACATCATCAGTGCAAACACCAGAGTTGTTTAAAGGTTGCCTGAAAGAATATCAGCTAAAGGGTCTGCAGTGGCTGGTTAATTGTTATGAGCAGGGTTTGAATGGCATCCTTGCTGATGAGATGGGCCTGGGAAAGACCATCCAAGCCATGGCGTTCTTGGCTCATTTAGCTGAGGAGAAAAATATATGGGGGCCCTTTCTGATTGTTGCACCTGCTTCTGTCTTGAACAACTGGGCTGATGAAATTAGTCGTTTCTGCCCTGAATTGAAAACACTTCCATATTGGGGTGGGCTTCAGGAAAGGACGATACTTAGGAAAAACATTAATCCAAAGCGTCTCTATAGAAGGGAGGCTGGATTCCACATACTCATTACTAGCTACCAACTGCTAGTGTCCGATGAGAAGTATTTCCGGCGAGTGAAATGGCAATATATGGTATTAGATGAAGCCCAGGCAATTAAAAGTTCGAACAGTATAAGGTGGAAGACATTGCTCAGTTTCAATTGTAGGAACCGCTTGCTTCTGACTGGGACACCCGTACAGAATAACATGGCAGAGCTGTGGGCCCTTCTCCATTTCATTATGCCCACCTTGTTTGATAGCCATGAGCAGTTCAATGAGTGGTTTTCAAAAGGCATTGAGAGCCATGCAGAACATGGAGGAACTTTAAACGAACACCAGCTTAACAGACTGCATGCAGTGCTAAAGCCTTTTATGTTGCGACGAGTTAAAAAAGATGTGATTTCTGAGATGACCTGCAAAAAAGAGGTCATGGTGCACTGCAAATTGAGTTCTCGGCAGCAAGCCTTTTATCAAGCTATAAAGAACAAGATATCTCTTTCCGAGTTGTTTGATGGCAGTCGGGGGCATCTTAATGAGAAGAAAATTCTTAATTTAATGAATATTGTCATCCAACTGAGGAAGGTTTGCAACCACCCAGAGTTGTTTGAACGGAATGAGGGAAGCACATACTTGTACTTTGCAGAGATCCCAAATTCTCTTCTGCCTCCTCCTTTTGGGGAGTTGGAGGCCATACACTATGCTGGAAGTCAGAATCCTATAACATACATGGTACCAAAGCTGGTCCATCAAGAATTCGTCCAAAGTGCTGAAATGCCTTGCTTGGCATTCAGCCACGGTATCCAGAGAGAAACATTCGAGAAGTTTTTCAATATATTCTCTCCGGAGAAAATTTATCGATCTGTATTCTCGCAAGATAAAAGCTCTCACAGGTCTCCTGTCAAAAGTGGAGCATTTGGTTTTACCCATTTGATGGATTTGTCTCCAGAAGAGGTTGCCTTTTTTGCTGAAGGCTCATTTATGGAGAGGCTTTTGTTTTCCATTATGAGGTGGGACCGACAATTTTTAGATGAAATCTTGGACTTGTTAATGGAAGCTGAGAGTGATGATCTTCAGTATAGTCACCTTGAGAGGGGAAAGGTGAGAGCTGTTACACGGATGTTACTGATGCCATCAAGATCCGAGTCTAATTTACTCAGAAGGAAACTCGCAATGGATCCTGGTCATGCCCCGTATGAGGCATTAGTTGTCTCTCATCAGGATAGGCTTTTATCCAACATCAGGCTCCTTCATTCAACATATGCTTTCATCCCTCAAAGTAGATCTCCACCAATTAATGCCCACTGCTCCGATAGAAATTTTGCTTATAAAATGCTTGAAGAACTACACCACCCCTGGATTAAGAGGTTGTTCTTTGGGTTTGCACGAACATCTGAGTGTAACGGACCTAGAGAACCTAATGGTCCTCATCATTTGATACAAGAGATCGATTCTGAGTTGCCTATTGCACAACCCATTCTGCAGCTCACATACAAGATATTCGGGTCTTCTCCACCTTTGCAAAGTTTTGACCCTGCAAAGATGCTCACTGATTCTGGGAAGCTTCAAACACTGGATATATTATTGAAGCGCTTGCGGGCTGAAAATCACCGTGTTCTTTTGTTTGCACAAATGACAAAAATGCTGAATATTCTTGAGGACTACATGAATTATAGGAAATATAGATATCTTCGACTTGATGGATCCTCCACCATTATGGATCGTCGTGACATGGTCAGAGACTTCCAGCATCGGAGCGATATTTTTGTGTTCTTGCTGAGTACTAGAGCTGGTGGACTGGGTATTAACTTGACTGCTGCCGACACTGTCATTTTCTACGAAAGCGATTGGAATCCAACCTTGGATCTACAGGCAATGGATAGAGCCCACCGGCTGGGTCAGACTAAGGAGGTCACGGTGTACCGGTTGATTTGTAAAGAGACTGTTGAAGAGAAGATTCTGCAAAGAGCCAGTCAGAAAAATACTGTGCAGCAGCTGGTCATGACGGGTGGCCATGTTCAGGGTGACCTCTTGGCTCCTGAGGACGTTGTTTCTTTACTTTTTGACGATGCCCAGTTGAAGCAGAAACTTAGAGAGGTTCCAATACAGGGTAAGGATCGGCAGAAGAAGAAACGTGGAACAAAGGGCATACTGCTAGATGCAGAAGGCGATGCATCTTTGGAAGATTTCACAAACATTGGATCACAGGGTGCTGGATTTGAGCCTGCTCCAGATCTTGAGAGCAGCATGACTAGTAATAAAATGAGGAAAGCCAGCTCAGACAGGCAATCACCTCCAAAACCCCGGAAGTCTCAGAAAGCTCCCAAAAACACTGATCCTTTCTTGGGGATGAATGAACCTAACCCATTGGACTATGAGTTGATGGATCCTCTCAGGAATATAGACTTGCAACAACAGAAACCCAAGAGGCCCAAGAGGCCAAAGAAAAGTGTAAATGAGAACCTTGAACCGGCATTTACTGCAGCCAGCAATGTAATTACAGAGCCTACTGAGTATCCACCTGTGTCTGATTTTAACTCTCAGGAGATCTCACCTTGGAGCCGCTCACCAATCAAATGA 4707 0.447 MEHKRHSKKGFSYPNLFNLESLTNFQLPQQDDDFDNYGNSSQDESRGSQGQGAMVDHGNGIGSERSSEFGMTRKKKRPHIEAGSNSSARRDAGSNDDDDDNYRTHISEERYHSMLGEHVQKYRRVKFKESSSNPTSNRMEMSVPKRNLGSKGRKLGNEERVLHGMETPSEYLANISPLKPPNYYEADFALEYGADKFSSTIDSTYLDIGEGITYRIPPTYNKLTASLKLPSFSDIWVEEYYLKGTLDLGTLAVMMANDRRFGSQSRLGMGEPQPQYKSLQARLKALSACNSVQKFTLQVCDIGFDSSSIPEGAAGGTQRSIMSEAGPLQVYYVKVLEKGDTYEIIERRLPKKQVVKKDPALIEKEEMEKIGKVWVNIVRRDIPKHQRIFSNFHRKQLIDAKRFSETCQREVKLKVSRSLKLMRGAAIRTRKLARDILVFWKRVDKEQAEVRKREEREAAEALKREEELREAKRQQQRLNFLLSQTELYSHFMQNKSTSQPSEALPVGDGESNDEEAPMSSSDVKLGEEEDPDEAELKREALRAAQHAVSQQKKIISAFDSECLKLRQASEPESPPKDTTITGSSNMDLLNPSTMPITSSVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLIVAPASVLNNWADEISRFCPELKTLPYWGGLQERTILRKNINPKRLYRREAGFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAVLKPFMLRRVKKDVISEMTCKKEVMVHCKLSSRQQAFYQAIKNKISLSELFDGSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTYLYFAEIPNSLLPPPFGELEAIHYAGSQNPITYMVPKLVHQEFVQSAEMPCLAFSHGIQRETFEKFFNIFSPEKIYRSVFSQDKSSHRSPVKSGAFGFTHLMDLSPEEVAFFAEGSFMERLLFSIMRWDRQFLDEILDLLMEAESDDLQYSHLERGKVRAVTRMLLMPSRSESNLLRRKLAMDPGHAPYEALVVSHQDRLLSNIRLLHSTYAFIPQSRSPPINAHCSDRNFAYKMLEELHHPWIKRLFFGFARTSECNGPREPNGPHHLIQEIDSELPIAQPILQLTYKIFGSSPPLQSFDPAKMLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKEVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDLLAPEDVVSLLFDDAQLKQKLREVPIQGKDRQKKKRGTKGILLDAEGDASLEDFTNIGSQGAGFEPAPDLESSMTSNKMRKASSDRQSPPKPRKSQKAPKNTDPFLGMNEPNPLDYELMDPLRNIDLQQQKPKRPKRPKKSVNENLEPAFTAASNVITEPTEYPPVSDFNSQEISPWSRSPIK* 1569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00629 1568 PANTHER HELICASE SRCAP-RELATED 62 561 - -
Eupl05g00629 1568 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1233 1383 IPR001650 -
Eupl05g00629 1568 Gene3D - 1202 1438 IPR027417 -
Eupl05g00629 1568 Coils Coil 445 484 - -
Eupl05g00629 1568 MobiDBLite consensus disorder prediction 129 143 - -
Eupl05g00629 1568 CDD SF2_C_SNF 1221 1353 - -
Eupl05g00629 1568 MobiDBLite consensus disorder prediction 572 589 - -
Eupl05g00629 1568 MobiDBLite consensus disorder prediction 566 589 - -
Eupl05g00629 1568 MobiDBLite consensus disorder prediction 22 109 - -
Eupl05g00629 1568 FunFam DNA helicase INO80-like protein 1201 1450 - -
Eupl05g00629 1568 Pfam Helicase conserved C-terminal domain 1233 1342 IPR001650 -
Eupl05g00629 1568 MobiDBLite consensus disorder prediction 68 84 - -
Eupl05g00629 1568 MobiDBLite consensus disorder prediction 91 109 - -
Eupl05g00629 1568 FunFam Putative DNA helicase INO80 582 860 - -
Eupl05g00629 1568 SMART helicmild6 1259 1342 IPR001650 -
Eupl05g00629 1568 MobiDBLite consensus disorder prediction 1532 1568 - -
Eupl05g00629 1568 Pfam DNA-binding domain 368 498 IPR020838 GO:0003677
Eupl05g00629 1568 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 622 793 IPR014001 -
Eupl05g00629 1568 SMART ultradead3 606 801 IPR014001 -
Eupl05g00629 1568 MobiDBLite consensus disorder prediction 1469 1483 - -
Eupl05g00629 1568 MobiDBLite consensus disorder prediction 22 49 - -
Eupl05g00629 1568 MobiDBLite consensus disorder prediction 1438 1568 - -
Eupl05g00629 1568 Pfam SNF2-related domain 625 912 IPR000330 GO:0005524|GO:0140658
Eupl05g00629 1568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 838 IPR027417 -
Eupl05g00629 1568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 1402 IPR027417 -
Eupl05g00629 1568 MobiDBLite consensus disorder prediction 127 152 - -
Eupl05g00629 1568 MobiDBLite consensus disorder prediction 494 535 - -
Eupl05g00629 1568 ProSiteProfiles DBINO domain profile. 373 498 IPR020838 GO:0003677
Eupl05g00629 1568 Gene3D - 583 863 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00629 Eupl-Chr5 24846558 24866702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00629 631 912 RAD5 or RAD16-like Gene Family AT5G43530 29.052 1.87e-25 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl05g00629 SNF2_N 7.3e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00629 K11665 - nnu:104606265 2552.7