Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00612 ATGGCGATCCCCTTAGACTGCCTATCGAGCCTTCTCTGCGCAGAAGATTGCAGATTCATTGTTGACGATGAAGAGGTGGTTAGTAGACTACCTCAACAGAAGCAGCCACACCAGATATTGTTCTTCGATGATTTCAGCTTCGATTACTCACGAATTTCATCGCTTCTTGAGAAGGAACGACAACTAACGCCAAGAGACGACTATTTAACGAGGCTTCATTCTGGAGACCTCGATGTCTCCGCTCGTAATGACTCGGTTGAGTGGATTTACAAGGTTCATCGCCATTACAGCTTCGGACCATTAACAGCTTGTTTATCTGTGAACTATCTGGATCGATTCCTATCACAGTATGAGCTTCCTCGTGGAAAGCAATGGATGGTCCAATTACTCTCTGTTTCTTGCTTGTCCTTGGCAACAAAAATGGAGGAATCTGATGCCACATTACCTTTAGATTTACAGGTTGTTGAAGGTAAGCTCGTATTCGAAGCTCGAACGATTCAGAGAATGGAGCTTTTATTACTTTCAGTGCTGAAGTGGAGAACCAACGCAGTGACCCCTCTCTCCTTCATCGATTATTTCCTTCATAGAACGATAAACCCAGAAAAACTAAACCCCAAATCTATGTTTTTTCGATCTGTAGAGCTGGTTCTAATCACAACCAAAGGTATCGAATTCCTTGAATTTTGGCCATCAGAGATTGCATTAGCTGTTATAATCTCCATTGTTGGGGAAACCCAGACCATCGATTTTAATGGGGCATTCGAATCCTGCTGTTCTTCTTGTTCATCTTCATCCTCACCCCATTTAAACAAGGAGAGAGTGCTGAAGTGCTACGATTTGATCCAAGAACTTGTAAGTTCAACGGCGATGGGAAGAGAAGGGATTCGTGGGTCCTGTTCAAGGATTCATCGTGGCTGTGTGGGGACGACAATGAGCCCATCTGGAGTTCTTGATGCTTCACGGCTACTGAGCTTTGATAGCAGTAGTAGAAGTAGAACAAGTGCTGGTGTTGGGTTCGGTTCTGGTGTGGCCTCGGCACCGAAGAGAAGAAAATTGGATCTTTTATAG 1068 0.4429 MAIPLDCLSSLLCAEDCRFIVDDEEVVSRLPQQKQPHQILFFDDFSFDYSRISSLLEKERQLTPRDDYLTRLHSGDLDVSARNDSVEWIYKVHRHYSFGPLTACLSVNYLDRFLSQYELPRGKQWMVQLLSVSCLSLATKMEESDATLPLDLQVVEGKLVFEARTIQRMELLLLSVLKWRTNAVTPLSFIDYFLHRTINPEKLNPKSMFFRSVELVLITTKGIEFLEFWPSEIALAVIISIVGETQTIDFNGAFESCCSSCSSSSSPHLNKERVLKCYDLIQELVSSTAMGREGIRGSCSRIHRGCVGTTMSPSGVLDASRLLSFDSSSRSRTSAGVGFGSGVASAPKRRKLDLL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00612 355 Pfam Cyclin, C-terminal domain 184 288 IPR004367 -
Eupl05g00612 355 SMART Cyclin_C_2 184 313 IPR004367 -
Eupl05g00612 355 CDD CYCLIN_AtCycD-like_rpt1 81 179 - -
Eupl05g00612 355 FunFam D2/4-type cyclin 65 178 - -
Eupl05g00612 355 Gene3D - 53 246 - -
Eupl05g00612 355 PANTHER CYCLINS 52 284 IPR039361 -
Eupl05g00612 355 Pfam Cyclin, N-terminal domain 53 181 IPR006671 -
Eupl05g00612 355 FunFam D6-type cyclin 179 279 - -
Eupl05g00612 355 ProSitePatterns Cyclins signature. 82 113 IPR006671 -
Eupl05g00612 355 CDD CYCLIN_AtCycD-like_rpt2 184 281 - -
Eupl05g00612 355 SMART cyclin_7 87 175 IPR013763 -
Eupl05g00612 355 Gene3D - 65 182 - -
Eupl05g00612 355 SUPERFAMILY Cyclin-like 48 180 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00612 Eupl-Chr5 24543026 24544854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00612 10 253 Core Cell Cycle Gene Families AT5G65420 45.059 2.08e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00612 K18810 - nnu:104613419 399.823