Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00606 ATGGGTAGAGGGAAGATTGAGATCAAGAGGATTGAGAACGCTACTAGTCGGCAAGTTACTTTCTCGAAGCGTCGTGCTGGATTGCTTAAGAAGGCTCAAGAGCTTTCAATTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCAGCACTGGGAAGCTCTTCGAATTCGCTAGCAATGGCATGAAACGAACACTTTCAAGATACAACAAGTGCCAAGATTATTCTGAAACTCCTATAGTTGAGTACGAGACAGAGAAGCAACAGTCTAAGGAGGTAAACATTCTGAAAGATGAAATTTCGAAGCTACAGATGGCACACTTGAGGATGATGGGTAAGGAATTGACGGGCTTGAGCTTAAAAGAAATGCAGCACCTTGAACATCAATTAAATGAAGGGATATTGTCTGTCAAGGGTAGGAAGGAGCAATTACTGTTGGAACAGCTTGAGCAATCAAGATTTCAGGAACAACGTGCCGTGCTGGAGAACGAGACTTTGCGCAAGCAGGTTGAGGAGCTTCGAGCTTTGCTTCCACCAACTGAATGCGCAATGCCACCATACCTAGAGTTCCATTCCATGAAAGGAAACATTCACACATAA 600 0.4367 MGRGKIEIKRIENATSRQVTFSKRRAGLLKKAQELSILCDAEVALIVFSSTGKLFEFASNGMKRTLSRYNKCQDYSETPIVEYETEKQQSKEVNILKDEISKLQMAHLRMMGKELTGLSLKEMQHLEHQLNEGILSVKGRKEQLLLEQLEQSRFQEQRAVLENETLRKQVEELRALLPPTECAMPPYLEFHSMKGNIHT* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00606 199 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl05g00606 199 FunFam MADS-box transcription factor MADS-MC 13 92 - -
Eupl05g00606 199 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl05g00606 199 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl05g00606 199 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl05g00606 199 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl05g00606 199 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Eupl05g00606 199 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl05g00606 199 Coils Coil 156 176 - -
Eupl05g00606 199 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl05g00606 199 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Eupl05g00606 199 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl05g00606 199 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl05g00606 199 Coils Coil 86 106 - -
Eupl05g00606 199 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Eupl05g00606 199 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00606 Eupl-Chr5 24492644 24512041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00606 1 188 MADS-box Gene Family AT5G13790 61.170 7.07e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl05g00606 K-box 8.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00606 - - nnu:104606311 312.768