Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00599 ATGGGAAAGAAGATAAAGATGAGGGAGGACGGAGGAGGGTTGAAGAAAGGAGACAGCGATCACTCCCGGTCGACGGTATTCGTCAGCAACTTGCCCTATTCGCTTACGAACACGGAGTTGGAAGAAACATTTAGCGAGGTGGGTCCCATAAGGCGATGCTTTATGGTTACTCAAAAGGGATCAGATGTACATCGTGGCTTTGGGTTTGTCCAATTTGCTGTTACAGAAGATGCTGATCATGCCATTGAGCTGAAAAATGGTGCATCTATTGGTGGGAGGAAAATTGGAGTTAAACATGCCATGCACCGTCTTCCCCTTGACCAACGCCGGTCAAAGGCCAATCAAGTTCATGCAGATGATATCAAGGCAAAGGATGATAAGGAAAACCTTTCCCATGGGGTTTTCAAACATGAACACGCTCCAAACACGCTTGAAATAGGGGAGTCAAAGGGAACCAAGAAAGCAGTGGCACTTCGCAGTGATCTTGCTGATAAAGGGGATAGTTCAGAAAAGCAGAGGATTGCTAGAACAGTCATAATTGGCGGACTTCTTAGTGCTGATATGGCTGAGGAAGTTTTCCATCGTGCCAAAGAGGTTGGCACTGTATGTTCTGTAACTTGTCCTCTTCCGAAAAAAGAGCTTGAACTCCATGGGCTTGCTCGAGATGGATGCAAAATGGATGCTTCAGCTGTACTTTATGCAAGTGTTAAAGCAGCACGTGCTTCTGTTGCCATGTTGCACCAACAGGCGATAAAAGATGGATGTGTATGGGCACGTCAGTTGGGTGGGGAGGGTTCCAAGACTCAGAAGTGGAAACTTATAGTTAGAAATCTTCCTTTCAAGGCTAAAGTCGATGAGATTAGAGATCTGTTTTCATCCGCAGGTTTTGTGTGGGACGTATTTATTCCACAAAAGTTCGAGACAGGATTATCTAAGGGCTTTGCATTTGTTACCTTCACGTGCAAGCAAGATGCAGAAAAAGCCATCCAGAAGGTTAATGGGCAAATATTTGGTAAAAGACCCATTGCTGTTGATTGGGCTGTTCCAAAGAAAATATATACCACTGGTGCTAATGATGTCGATGCAACAAAAGATGGGCAACAAAATGATAGATATGAGGAGAGTGACACCAGTGGTGATGATTTGGAGGATGATTTTACTGATGGTGATAGGAAACTCCAAAACCCTCATGTAGGAGAAATTGTTCTAGGAGATTTTAATGCCACAGAGAATGGAGTTCCTCTTAAAGAGGTGGATTTTGATGAGGAGGCAGACATTGCAAGGAAAGTTCTTAAGAACTTGATCACATCCTCTGCAAAAGAAACCTTGCCTTCTGTCGGTGATGATTCCACGTTACCTCAAAGTAATGAGTTATCTGTTGAGTCTGGAAAAAATTCAGGTACAGTGAAACCTGAAAAGTCTGCCAAAATTGAACTGACGAGTCTTGAACAGATTGAGGCTGAGGAAGATCTGCAGAGAACAATTTTCATAAGCAACCTTCCATTTGATATTGATATTGAAGAGGTGAAACAACGGTTCTCTGCCTTCGGGGAAGTACAATCCTTTGTCCCAGTTCTTCATAAAATCACCAAGCGACCGAGAGGAACTGGGTTTCTCAAGTTTAGTACAGCATCTGCAACAGATGCTGCAGTTTCAGCAGCGAATGTTACATCCGGTTTAGGGATTAGTCTGAAAGGTAGACAACTGACTGTTTTGAAGGCTTTGGACAAGAAATCAGCTCACTGTAAGGAACTGGAGAAGACGAAGAATGAGGTTCATGACCACCGCAATCTTTATCTTGCAAAGGAAGGTGTCATTCTTGAGGGGTCGCCAGCGGCCGAAGGTGTTTCAGCAAGTGATATGTTGAAGCGCCAAATGTTGGAAAAGAAAAAGATGTCTAAGCTTCAATCTCCGAATTTTCATGTGTCAAGAACTAGACTCATTGTATACAATTTGCCAAAGGCAATGACAGAAAAGGAACTTAAAAAGCTCTGTATAGATGCAGTTCTTTCCCGAGCTAGCAAACAAAATCCTGTGATTCGACAGATAAAGTTCTTGAAGGATTCAAAGAAAGGAAAGGTTGTTGCAAAGAACTATTCGCGTGGAGTAGCTTTTGTCGAGTTCACTGAACATCAGCATGCACTTGTGGCCCTGAGAGTTCTTAATAATAATCCTGAAACTTTTGATCCTGAGCACCGCCCGATCGTCGAGTTTGCTCTTGATAATGTCCAAACGTTAAGGTTGAGGAAATTTAAGCAACAGTCTCAGCAAGGCAACCGTGCCAGTGCAGAAGATGTGCAGCAAAATACTACATCGCAAATGGAAGATGCCCCTCCAAACGAGAGGGACGAGAAGAAATTGAAGAAGCGCAAAGTCAGAGGCGATAACAGATCATCTGAGGCATCGGAACCTAGTAAAGGAGATGAAGGGGCACTAAAGGGAGCCACTTACAAAGGCGGCCTTGCAACCAAGAAGCTGAAGGGTGCTCCAGCAAGAGAAAGAAAGGCCAAGTTTGCTTCCAAAGCTAAACCTGAGGGGTCAACTCCGAGGCCAAACAAGCACCGAGAAGGGACAAACTCTCATGTTGGAAAAATATTTGACGGTGCAAATAATGATGTTAATACCCACGAGTTAAAATCTAAGGTGGGTCCACAAAAGAGGAAGCTGCAGGATGGTGTTGATTCAGAACAACAAAAGGATGGGAAATATTCGAAGAAGAAAAAGAAAAATACCAAGAATGCAGAAGCTTCAGGGCATGGAGTGGTAGATAAACTTGACGTGCTGATCGAACAGTATCGATCCAAGTTTTCACAGCAGAGTTCTAACAAGCCTGATGGTGAAAAGCAAGGTTCTAGACAACTCAGAAGATGGTTCCAGACGTAG 2883 0.4367 MGKKIKMREDGGGLKKGDSDHSRSTVFVSNLPYSLTNTELEETFSEVGPIRRCFMVTQKGSDVHRGFGFVQFAVTEDADHAIELKNGASIGGRKIGVKHAMHRLPLDQRRSKANQVHADDIKAKDDKENLSHGVFKHEHAPNTLEIGESKGTKKAVALRSDLADKGDSSEKQRIARTVIIGGLLSADMAEEVFHRAKEVGTVCSVTCPLPKKELELHGLARDGCKMDASAVLYASVKAARASVAMLHQQAIKDGCVWARQLGGEGSKTQKWKLIVRNLPFKAKVDEIRDLFSSAGFVWDVFIPQKFETGLSKGFAFVTFTCKQDAEKAIQKVNGQIFGKRPIAVDWAVPKKIYTTGANDVDATKDGQQNDRYEESDTSGDDLEDDFTDGDRKLQNPHVGEIVLGDFNATENGVPLKEVDFDEEADIARKVLKNLITSSAKETLPSVGDDSTLPQSNELSVESGKNSGTVKPEKSAKIELTSLEQIEAEEDLQRTIFISNLPFDIDIEEVKQRFSAFGEVQSFVPVLHKITKRPRGTGFLKFSTASATDAAVSAANVTSGLGISLKGRQLTVLKALDKKSAHCKELEKTKNEVHDHRNLYLAKEGVILEGSPAAEGVSASDMLKRQMLEKKKMSKLQSPNFHVSRTRLIVYNLPKAMTEKELKKLCIDAVLSRASKQNPVIRQIKFLKDSKKGKVVAKNYSRGVAFVEFTEHQHALVALRVLNNNPETFDPEHRPIVEFALDNVQTLRLRKFKQQSQQGNRASAEDVQQNTTSQMEDAPPNERDEKKLKKRKVRGDNRSSEASEPSKGDEGALKGATYKGGLATKKLKGAPARERKAKFASKAKPEGSTPRPNKHREGTNSHVGKIFDGANNDVNTHELKSKVGPQKRKLQDGVDSEQQKDGKYSKKKKKNTKNAEASGHGVVDKLDVLIEQYRSKFSQQSSNKPDGEKQGSRQLRRWFQT* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00599 960 SUPERFAMILY RNA-binding domain, RBD 23 255 IPR035979 GO:0003676
Eupl05g00599 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 349 IPR000504 GO:0003723
Eupl05g00599 960 MobiDBLite consensus disorder prediction 751 776 - -
Eupl05g00599 960 FunFam RNA-binding motif protein 28 644 739 - -
Eupl05g00599 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 493 576 IPR000504 GO:0003723
Eupl05g00599 960 Gene3D - 2 116 IPR012677 -
Eupl05g00599 960 PANTHER RNA-BINDING MOTIF PROTEIN 14B 21 959 - -
Eupl05g00599 960 MobiDBLite consensus disorder prediction 879 903 - -
Eupl05g00599 960 Gene3D - 644 739 IPR012677 -
Eupl05g00599 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 645 753 IPR000504 GO:0003723
Eupl05g00599 960 MobiDBLite consensus disorder prediction 442 472 - -
Eupl05g00599 960 MobiDBLite consensus disorder prediction 777 807 - -
Eupl05g00599 960 MobiDBLite consensus disorder prediction 442 469 - -
Eupl05g00599 960 CDD RRM3_RBM28_like 493 574 - -
Eupl05g00599 960 Gene3D - 481 583 IPR012677 -
Eupl05g00599 960 Gene3D - 259 385 IPR012677 -
Eupl05g00599 960 SUPERFAMILY RNA-binding domain, RBD 493 723 IPR035979 GO:0003676
Eupl05g00599 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Eupl05g00599 960 CDD RRM1_RBM28_like 25 103 - -
Eupl05g00599 960 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 95 IPR000504 GO:0003723
Eupl05g00599 960 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 495 555 IPR000504 GO:0003723
Eupl05g00599 960 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 342 IPR000504 GO:0003723
Eupl05g00599 960 MobiDBLite consensus disorder prediction 1 22 - -
Eupl05g00599 960 MobiDBLite consensus disorder prediction 932 960 - -
Eupl05g00599 960 MobiDBLite consensus disorder prediction 751 960 - -
Eupl05g00599 960 MobiDBLite consensus disorder prediction 358 393 - -
Eupl05g00599 960 MobiDBLite consensus disorder prediction 827 861 - -
Eupl05g00599 960 CDD RRM2_RBM28_like 272 348 - -
Eupl05g00599 960 CDD RRM4_RBM28_like 645 742 - -
Eupl05g00599 960 SUPERFAMILY RNA-binding domain, RBD 267 353 IPR035979 GO:0003676
Eupl05g00599 960 SMART rrm1_1 272 345 IPR000504 GO:0003723
Eupl05g00599 960 SMART rrm1_1 646 737 IPR000504 GO:0003723
Eupl05g00599 960 SMART rrm1_1 494 572 IPR000504 GO:0003723
Eupl05g00599 960 SMART rrm1_1 25 98 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00599 Eupl-Chr5 24301596 24325226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00599 26 347 Eukaryotic Initiation Factors Gene Family AT2G23350 25.846 2.09e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00599 K14573 - ming:122063584 1206.43