LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl05g00592	ATGTCTCAGGCAATTTCATCAATGGATCATGAGTGTGAGAAGGCTCTATTAGAGTATGCTAGGAGATCATCTCCTCCACCTTTCCTAGTGAAAACTTTTATGCTTGTCGAAGATCAAGCCACCGACGACGTAATTTCGTGGAACGCCGGTGGAACAGCTTTCGTGGTTTGGAAACCAGACCAGTTCTCAAGAGATCTCCTTCCAACCCTTTTCAAGCACAGCAACTTCTCCAGCTTTGTTCGGCAACTCAACACTTATGGGTTTCGGAAAGTCGTAACAAGCCGATGGGAATTCTACAACGAAATGTTCCGAAAGGGTGAAAGGGAGTTACTATGCGAAATCCGTCGAAGAAAAACAAAAACAACTAAGCTTCATCCTATTAATGCACCAGCTCGAACCGCACCGCACGAGGCTGATGATGAAGATCCAGGGTCATCATCGACATCGTCATCGTCAGGATACAGTACCCTTTCCGACGAAAACAAGCGACTCAAAAGGGAGAATAGACTCTTGAACTCTGAGCTGATGAGTATGAAGAACAAGTGCAAGGAGCTTCTTGATTTGGTGGCCATGTACTCGAGCTCGGAGGATACTGTAAAGGATGAAAGGCCTATGCTGTTTGGGGTAAGGTTGGAGGTTTCAGTGGAGAGAAAGAGAAAGAGAGCAGATATTAGGTAG	678	0.4572	MSQAISSMDHECEKALLEYARRSSPPPFLVKTFMLVEDQATDDVISWNAGGTAFVVWKPDQFSRDLLPTLFKHSNFSSFVRQLNTYGFRKVVTSRWEFYNEMFRKGERELLCEIRRRKTKTTKLHPINAPARTAPHEADDEDPGSSSTSSSSGYSTLSDENKRLKRENRLLNSELMSMKNKCKELLDLVAMYSSSEDTVKDERPMLFGVRLEVSVERKRKRADIR*	226

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl05g00592	225	Gene3D	-	19	119	IPR036388	-
	Eupl05g00592	225	MobiDBLite	consensus disorder prediction	144	158	-	-
	Eupl05g00592	225	Coils	Coil	154	188	-	-
	Eupl05g00592	225	SUPERFAMILY	"Winged helix" DNA-binding domain	23	117	IPR036390	-
	Eupl05g00592	225	Pfam	HSF-type DNA-binding	28	117	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl05g00592	225	PRINTS	Heat shock factor (HSF) domain signature	79	91	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl05g00592	225	PRINTS	Heat shock factor (HSF) domain signature	28	51	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl05g00592	225	PRINTS	Heat shock factor (HSF) domain signature	66	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl05g00592	225	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	21	189	IPR027725	-
	Eupl05g00592	225	FunFam	Heat stress transcription factor B-4	20	118	-	-
	Eupl05g00592	225	MobiDBLite	consensus disorder prediction	122	161	-	-
	Eupl05g00592	225	ProSitePatterns	HSF-type DNA-binding domain signature.	67	91	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl05g00592	225	SMART	hsfneu3	24	117	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl05g00592	Eupl-Chr5	24139307	24141311	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl05g00592	20	212	HSF	AT2G41690	53.774	1.68e-67	206

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Eupl05g00592		HSF_DNA-bind	5.7e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl05g00592	K09419		-	nnu:104613401	322.013