Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00588 ATGGCTTCTTCCTCTTCTGAGCCTGGATTGAAGGCTGAAGGAGGAGGGGGTGGAGGAGGAGGAGGAGGAGAAGCTTCAGAAGCTGCAATGGCGAACGATCAGCTTCTCCTCTATAGAGGACTGAAGAAAGCTAAGAAGGAAAGAGGGTGTACAGCCAAGGAGAGGATCAGCAAAATGCCGCCTTGCGCCGCAGGAAAGAGGAGCTCCATTTACAGAGGAGTTACCAGGCATAGATGGACTGGGCGCTACGAAGCTCACCTTTGGGATAAAAGTACGTGGAACCAAAACCAGAATAAGAAGGGGAAACAAGTTTACTTAGGTGCATATGATGATGAGGAGGCCGCAGCTAGAGCATATGATCTTGCTGCTCTAAAATATTGGGGTCCTGGGACACTCATTAATTTTCCAGTAAGTGATTATTCAAGAGATCTTGAAGAGATGCAGAATGTTTCAAGAGAGGAATACCTTGTATCTCTTAGAAGAAAAAGTAGTGGTTTCTCAAGAGGAATCTCTAAATATCGTGGACTTTCCAGACCATCACAAAGTAGTCGATGGGAGACATCCTTTGGTCGGATGGGCGGACCTGAGTATTTTAGTAGTATAAACTATGCTGCAGGCGAGGGTGCAACAACTGAAAGCGAATATCCAGGAGGCTTTTGTATTGATAGAAAATTTGATCTCACGAGTTGCATCAAGTGGTGGGGGCCTAATAAAATCCGTCGAACAGATTCTCTCACTAAATCATTAGAAGAAACAAAACAAGGTGTTTTGGAAGATGGTGGTGAGCTTAAAACATTGGAATGGGCCATCCAGCCGACTGAGCCATACCAGATGCCTCGTTTGGGACTTTCCCATGAAGGAAAGAAGCAGCAAGGGTCTGCAGTGTCTGCTTTGAGCATCTTATCACGGTCTGCTGCCTACAAGAGTTTGCAAGAGAAGGCATCAAAAAAACAGGACAACAACAACGACAATGAGAACAAGAACAATGAGATGGACTATGGCAAGGGAATCCAGAAATCAAGTGGTGACGGTGGGAGCGAGAGATTAGGAGTAACATTAGGAATGAGCTGGTTGCCTCTTCAAAGAACTTTGTATCCGTTGCCCCCTTTCCTGTCGGCACCACTCCTGACCAACTACAATACCATCGAACCCTTGGCAGATCCTATTCTTTGGACGTCTCTTGTTCCTGTGCCGCCAACAGGACTTTCTCTTACCACAGAGGTTACGAAGACAGAGACTAGTTCGACATATACCTTTCGCCAGGAGGAATGA 1272 0.4615 MASSSSEPGLKAEGGGGGGGGGGEASEAAMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVSDYSRDLEEMQNVSREEYLVSLRRKSSGFSRGISKYRGLSRPSQSSRWETSFGRMGGPEYFSSINYAAGEGATTESEYPGGFCIDRKFDLTSCIKWWGPNKIRRTDSLTKSLEETKQGVLEDGGELKTLEWAIQPTEPYQMPRLGLSHEGKKQQGSAVSALSILSRSAAYKSLQEKASKKQDNNNDNENKNNEMDYGKGIQKSSGDGGSERLGVTLGMSWLPLQRTLYPLPPFLSAPLLTNYNTIEPLADPILWTSLVPVPPTGLSLTTEVTKTETSSTYTFRQEE* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00588 423 MobiDBLite consensus disorder prediction 1 26 - -
Eupl05g00588 423 Coils Coil 307 330 - -
Eupl05g00588 423 SMART rav1_2 70 142 IPR001471 GO:0003700|GO:0006355
Eupl05g00588 423 ProSiteProfiles AP2/ERF domain profile. 70 136 IPR001471 GO:0003700|GO:0006355
Eupl05g00588 423 MobiDBLite consensus disorder prediction 311 332 - -
Eupl05g00588 423 Gene3D AP2/ERF domain 70 138 IPR036955 GO:0003700|GO:0006355
Eupl05g00588 423 Pfam AP2 domain 70 128 IPR001471 GO:0003700|GO:0006355
Eupl05g00588 423 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 34 301 - -
Eupl05g00588 423 FunFam AP2-like ethylene-responsive transcription factor 69 138 - -
Eupl05g00588 423 SUPERFAMILY DNA-binding domain 69 138 IPR016177 GO:0003677
Eupl05g00588 423 MobiDBLite consensus disorder prediction 311 345 - -
Eupl05g00588 423 PRINTS Ethylene responsive element binding protein signature 118 138 IPR001471 GO:0003700|GO:0006355
Eupl05g00588 423 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00588 Eupl-Chr5 23927110 23932161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00588 31 408 AP2-EREBP Transcription Factor Family AT2G41710 65.128 4.23e-154 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl05g00588 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00588 K09285 - nnu:104590512 653.669