Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00546 ATGGGAACTCCTGAATTTCCTGATCTTGGAAAACATTGCAGCGTGGAGGATTGCAAACAGATCGATTTTTTGCCTTTCACCTGCGATCGGTGCACCCAGGTATTCTGTTTAGAACATAGAAGTTATGTTAAACACAGCTGTCCAAATGCCAACAGACAGGATGTCACTGTTGTTGTCTGCCCACTCTGTGCTAAAGGAGTCCGCCTGGTTCCTGACGAAGACCCGAACATCACTTGGGAGTCCCATGTTAACATGGACTGTGACCCATCAAACTATGAGAAAGCAACGAAAAAGAAAAGGTGCCCTGTTTCTGGATGTAGAGAGACCCTAACATTCTCGAACACGATCAGATGCAGGGACTGCACCGTAGATCACTGCTTGAAGCACCGGTTTGGGGCTGACCACAAGTGCCCGGGACCCAAGAAACCCGATGCTGGGTTCCCTTTTATGGGTCTCTTAAAGAGGAGTCAGAAAGACGAGTCAAGACAGAACCGTGGTCCAACTGCATCGTCACCGAAGTGGGCTACAAGCTTTCTCAATGCAGCTTCAACTGTTCGAGCCTCAGCTGAAGCAGGCATGGCAAAATTGAGTATTGCAACTAACCAGGCGTTGCAGATGGCAAAGGATGGGATGGGGCAGAGCAGCAGTGGCAGTGGTAATGTACAAGTCGAGGAGTGCCCTCAGTGTCGGGCGAAATTCTCCTCTGTTGCAGCTCTGGTGGAGCATGTGGAGAAAGTCCATGAAGCTGGTAACAATCGAGCTGCTGTTAAGAAAGTGACAATTGATGTCTGCCCCAAATGTAGTAGAGGATTTCGAGATCCAGTAGCCTTGGTGGAACATGTTGAGAGGGACCATGGAGGGACTTCCAAAGCTTAA 876 0.492 MGTPEFPDLGKHCSVEDCKQIDFLPFTCDRCTQVFCLEHRSYVKHSCPNANRQDVTVVVCPLCAKGVRLVPDEDPNITWESHVNMDCDPSNYEKATKKKRCPVSGCRETLTFSNTIRCRDCTVDHCLKHRFGADHKCPGPKKPDAGFPFMGLLKRSQKDESRQNRGPTASSPKWATSFLNAASTVRASAEAGMAKLSIATNQALQMAKDGMGQSSSGSGNVQVEECPQCRAKFSSVAALVEHVEKVHEAGNNRAAVKKVTIDVCPKCSRGFRDPVALVEHVERDHGGTSKA* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00546 291 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Eupl05g00546 291 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Eupl05g00546 291 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Eupl05g00546 291 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Eupl05g00546 291 ProSitePatterns Zinc finger C2H2 type domain signature. 226 247 IPR013087 -
Eupl05g00546 291 SMART c2h2final6 262 285 IPR013087 -
Eupl05g00546 291 SMART c2h2final6 224 247 IPR013087 -
Eupl05g00546 291 Gene3D - 80 147 IPR035896 -
Eupl05g00546 291 Gene3D - 2 56 IPR035896 -
Eupl05g00546 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 290 IPR013087 -
Eupl05g00546 291 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 249 - -
Eupl05g00546 291 MobiDBLite consensus disorder prediction 156 175 - -
Eupl05g00546 291 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Eupl05g00546 291 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Eupl05g00546 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 252 IPR013087 -
Eupl05g00546 291 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Eupl05g00546 291 Gene3D Classic Zinc Finger 200 288 - -
Eupl05g00546 291 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Eupl05g00546 291 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Eupl05g00546 291 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00546 1 291 C2H2 Transcription Factor Family AT2G41835 65.068 7.90e-131 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl05g00546 zf-AN1 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00546 - - nnu:104585895 527.324