Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00539 ATGGCTGAGAGAGGCGGAGAGAGAGGAGGTTTCGGTCGCGGCTTCGGACGCGGCGGTGGCAGAGGCGACCGCGGTCGTGGAGACCGCCGCGGCGGGCGTCGTGGTGGCCGCCGAGAGGAAGAAGAGAAATGGGTGCCCGTAACGAAGCTCGGACGCCTGGTTAAGGAAGGAAAGATCAAAAGCTTGGAGCAGATCTACCTACACTCGCTACCCGTCAAAGAACACCAGATCGTAGATACCCTACTTGGCCCTCAGCTCAAAGACGAGGTCATGAAGATCATGCCAGTTCAGAAACAGACCCGAGCCGGCCAGAGAACCCGGTTCAAGGCTTTTGTCGTCGTCGGTGACGGTAACGGGCATGTTGGTTTGGGCGTGAAGTGCAGCAAAGAGGTTGCGACTGCTATTCGAGGTTCTATAATATTGGCCAAGCTGTCAGTGATTCCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAAGCCTCACACAGTGCCGTGTAAGGTTACCGGTAAGTGCGGGTCCGTTACGGTGCGGATGGTGCCCGCTCCTCGTGGAGCTGGGATTGTCGCAGCTAGGGTCCCCAAGAAGGTGCTGCAGTTCGCTGGAATTGAGGATGTTTTCACCTCCTCTCGCGGGTCGACGAAAACACTCGGGAACTTCGTCAAGGCAACTTTTGATTGTTTGCTGAAGACATACGGGTTCCTCACGCCTGATTTCTGGAGGGAGACTCGCTTCACAAAATCTCCATTCCAAGAGTACACAGACCTATTGGCCAAACCCACCAAGGCGATTACTCTGGAAGATGCAGAAAAGATCGATGCCTAG 825 0.5552 MAERGGERGGFGRGFGRGGGRGDRGRGDRRGGRRGGRREEEEKWVPVTKLGRLVKEGKIKSLEQIYLHSLPVKEHQIVDTLLGPQLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPDFWRETRFTKSPFQEYTDLLAKPTKAITLEDAEKIDA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00539 274 MobiDBLite consensus disorder prediction 1 42 - -
Eupl05g00539 274 FunFam 40S ribosomal protein S2 43 148 - -
Eupl05g00539 274 Pfam Ribosomal protein S5, C-terminal domain 170 241 IPR005324 GO:0003735|GO:0005840|GO:0006412
Eupl05g00539 274 NCBIfam 30S ribosomal protein S5 39 246 IPR005711 GO:0003735|GO:0006412|GO:0015935
Eupl05g00539 274 ProSiteProfiles S5 double stranded RNA-binding domain profile. 86 149 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Eupl05g00539 274 SUPERFAMILY dsRNA-binding domain-like 81 151 - -
Eupl05g00539 274 SUPERFAMILY Ribosomal protein S5 domain 2-like 162 242 IPR020568 -
Eupl05g00539 274 Gene3D - 149 241 IPR014721 -
Eupl05g00539 274 FunFam 40S ribosomal protein S2 149 242 - -
Eupl05g00539 274 ProSitePatterns Ribosomal protein S5 signature. 103 135 IPR018192 -
Eupl05g00539 274 Pfam Ribosomal protein S5, N-terminal domain 86 150 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Eupl05g00539 274 PANTHER RIBOSOMAL S SUBUNIT 37 232 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Eupl05g00539 274 Gene3D - 43 148 - -
Eupl05g00539 274 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00539 Eupl-Chr5 22418698 22423467 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00539 39 272 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 85.043 1.19e-148 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00539 K02981 - msin:131222566 471.47