Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00517 ATGGAGATGGCGATTGGCTTCCACACCCATCTCAAACCCTCTCTCTCTATCAACCAATCTCTCAGAAACCCTAACCCTAATCCTAAGATGAGCTCCTCTTCTCTCCTCCTCACAAAGCAAATCCTTGGCCACAGCTTCTCTTCTTCTCTAACCACTAAAAGAATCTCGAGTCGCAGCAATCGTTCGAGGTTTTCGAATCGATCTCCGATCAAATGTTCTGTTTCCGCAGCTGAAACCGCTACTGGAAAAAAGAATCAGTTAATGACGAGAAGTGACATAAGGAATATCGCGATTGTTGCTCATGTAGATCATGGGAAGACCACTTTGGTTGATGCAATGTTGAAACAAGCAAAGGTGTTTCGTGAAAACCAACTTGTACAAGAAAGGATTATGGATTCAAATGATCTGGAGCGCGAAAGGGGAATTACAATTCTTAGCAAAAACACATCAATCTCTTATAAGGATACAAAGATAAATATAATTGATACTCCAGGGCATTCTGACTTTGGTGGTGAGGTGGAACGGGTCCTAAATATGGTGGAAGGGGTTCTACTAGTGGTAGATTCTGTAGAGGGTCCAATGCCACAAACAAGATTTGTTTTAAAGAAAGCTCTCGAATTTGGGCATGCCGTTGTTGTTGTTGTGAATAAGATCGATAGACCTTCAGCTCGTCCAGATTTTGTGGTTAATTCCACTTTTGAACTCTTTATTGAACTGAATGCAACAGATGAACAGTGTGATTTCCAAGTAATATATGCAAGTGGTATCAAGGGAAAGGCTGGACTATCTCCAGAAAATTTGGCAGAGGATTTGGGACCACTTTTTGAGGCTATCATCAGATGCATACCAGGACCACGCATTAACAAAGATGGTGCATTGCAGATGCTTGTGACCAATACTGAGTATGATGAACACAAAGGACGAATTGCTATTGGACGCTTGCATGCCGGGCAGTTGCGAAGAGGAATGGATGTGAAGGTATGCACCTCGGATGAAGCATGTAGATATGCTAGAGTTAGTGAGCTTTTTGTGTATGAGAAGTTCAGCAGGGTTCCCGCGGAGACTGTGGAAGCTGGTGATATTTGTGCTGTCTGTGGTATTAATGATATTCTGATTGGGGAGACAATTGCTGATAAAAGTTCTGGGCAACCTTTACCTGCCATTAAGGTGGAAGAACCAACAGTGAAAATGGCTTTCTCTATCAACACTTCACCTTTTTCTGGTCGCGAGGGAAAGTATGTAACTAGTAGAAACCTGAGAGATCGACTCTACCGCGAGCTTGAGAGAAATTTAGCCATGAAAGTGGAAGATGGTGAAACTGCAGATACATTCCTTGTTAGTGGTAGGGGTACTTTGCATCTCACCATACTTATAGAAAACATGAGAAGGGAAGGATATGAGTTCATGGTTGGGCCACCCAAGGTTATCAACAAAAAAGTGAACGACAAATTGCTCGAACCTTTTGAGATAGCTACGGTTGAGGTACCAGAAGAATTCATGGGACCTGTGGTTGAACTTCTAGGGAAAAGGCGTGGGCAAATGTTTGATATGCAAGGGCTTGGGTCGGAGGGAACATCACTAGTTAAATATAAGATACCGACTCGTGGCCTTCTTGGATTGCGAAATGCAATTTTAACAGCTTCTCGAGGCACAGCAATCCTTAACACAATATTTGATGAGTATGGACCGTGGGCTGGAGAGATTAGCACAAGAGATCAGGGTTCATTGGTTGCATTTGAGGGTGGAGATACTACATCATACGCACTTTCTAGTGCACAAGATAGAGGTCAGATGTTTGTCAGCCCTGGTGTGGAAGTGTATAAAGGTCAAATAATAGGCATCCATCAGCGTCCTGGTGATCTGTCTCTTAATGTGTGCAAGAAGAAGGCTGCAACAAATATACGTTCCAACAAGGATCAAACAGTGATTCTTGATACTTCCTTGGATTATAGTCTGGATGATTGCATTGAGTACATTCAAGAAGATGAACTGGTGGAGGTCACTCCATCAAGCATTCGAATGTGCAAAAACCCAAAGCTTGCAAAGAAGACACGGTAA 2058 0.4281 MEMAIGFHTHLKPSLSINQSLRNPNPNPKMSSSSLLLTKQILGHSFSSSLTTKRISSRSNRSRFSNRSPIKCSVSAAETATGKKNQLMTRSDIRNIAIVAHVDHGKTTLVDAMLKQAKVFRENQLVQERIMDSNDLERERGITILSKNTSISYKDTKINIIDTPGHSDFGGEVERVLNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGKAGLSPENLAEDLGPLFEAIIRCIPGPRINKDGALQMLVTNTEYDEHKGRIAIGRLHAGQLRRGMDVKVCTSDEACRYARVSELFVYEKFSRVPAETVEAGDICAVCGINDILIGETIADKSSGQPLPAIKVEEPTVKMAFSINTSPFSGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFLVSGRGTLHLTILIENMRREGYEFMVGPPKVINKKVNDKLLEPFEIATVEVPEEFMGPVVELLGKRRGQMFDMQGLGSEGTSLVKYKIPTRGLLGLRNAILTASRGTAILNTIFDEYGPWAGEISTRDQGSLVAFEGGDTTSYALSSAQDRGQMFVSPGVEVYKGQIIGIHQRPGDLSLNVCKKKAATNIRSNKDQTVILDTSLDYSLDDCIEYIQEDELVEVTPSSIRMCKNPKLAKKTR* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00517 685 CDD BipA_III 393 471 IPR047043 -
Eupl05g00517 685 Pfam Elongation factor Tu GTP binding domain 92 283 IPR000795 GO:0003924|GO:0005525
Eupl05g00517 685 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 91 286 IPR000795 GO:0003924|GO:0005525
Eupl05g00517 685 CDD BipA_TypA_C 486 565 IPR035651 -
Eupl05g00517 685 PRINTS GTP-binding elongation factor signature 95 108 IPR000795 GO:0003924|GO:0005525
Eupl05g00517 685 PRINTS GTP-binding elongation factor signature 139 147 IPR000795 GO:0003924|GO:0005525
Eupl05g00517 685 PRINTS GTP-binding elongation factor signature 211 220 IPR000795 GO:0003924|GO:0005525
Eupl05g00517 685 PRINTS GTP-binding elongation factor signature 159 169 IPR000795 GO:0003924|GO:0005525
Eupl05g00517 685 Gene3D Elongation Factor G (Translational Gtpase), domain 3 394 677 - -
Eupl05g00517 685 FunFam GTP-binding protein TypA 394 497 - -
Eupl05g00517 685 CDD TypA_BipA 92 285 IPR047041 -
Eupl05g00517 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 293 IPR027417 -
Eupl05g00517 685 FunFam GTP-binding protein TypA 477 570 - -
Eupl05g00517 685 Gene3D bipa protein 571 650 IPR042116 -
Eupl05g00517 685 FunFam GTP-binding protein TypA 571 657 - -
Eupl05g00517 685 SUPERFAMILY EF-G C-terminal domain-like 486 601 IPR035647 -
Eupl05g00517 685 SUPERFAMILY EF-G C-terminal domain-like 391 475 IPR035647 -
Eupl05g00517 685 FunFam GTP-binding protein TypA 287 387 - -
Eupl05g00517 685 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Eupl05g00517 685 NCBIfam small GTP-binding protein domain 93 242 IPR005225 GO:0005525
Eupl05g00517 685 SMART EFG_C_a 483 572 IPR000640 -
Eupl05g00517 685 Pfam Elongation factor Tu domain 2 307 376 IPR004161 GO:0005525
Eupl05g00517 685 SUPERFAMILY Translation proteins 239 387 IPR009000 -
Eupl05g00517 685 Gene3D Translation factors 287 387 - -
Eupl05g00517 685 NCBIfam translational GTPase TypA/BipA 93 681 IPR006298 GO:0003924|GO:0005525
Eupl05g00517 685 Pfam Elongation factor G C-terminus 484 569 IPR000640 -
Eupl05g00517 685 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 87 261 - -
Eupl05g00517 685 Gene3D - 477 570 - -
Eupl05g00517 685 FunFam GTP-binding protein TypA 90 286 - -
Eupl05g00517 685 CDD BipA_TypA_II 293 386 IPR047042 -
Eupl05g00517 685 Gene3D - 90 286 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00517 Eupl-Chr5 21956851 21980855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00517 93 220 Eukaryotic Initiation Factors Gene Family AT3G22980 43.846 5.10e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00517 K06207 - nnu:104612989 1187.56