Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00512 ATGCAATCGAAACCTGAAACTTCAAATCCACTAGGACCTAATGCGCACAACATTCCACCGTCAACTATCTGTTCTCAACCTTGGTGGCGTGGTATTGCGTATAATGCTGTTCCTCCGGCCGTGTTAGGGGAGAGCGCATCAAAATCTTCTTCACTGGAACTCCCAGACGGTGGCATGGGGACCAAAGCTGGCCAATCACAAGCTGACGGTGCCCCGGATGATGGAGATGGTGTTAATAAAGAAATGCAGACTACTGTAACCTCACAATCCGGATCAGATGGAAATTATGGACATGAACACCAGCATCTGCAGCATGTTGCATCTACAATACCACAAACGTGTGGCGAATACATCATACCGCATGCCCAGCTTGAACTTGTTGGTCACTCAATAGCTTGTGCACCGTATCCATATTCTGATCCATATTACGGGGGAATAATGACTGCTTATGGAACTCAGGCGCTGGTACATCCTCATTTACTTGGAATGCGTCACACTAGAATGCCTTTGCCCCTTGAAATGGCAGAGGAGCCTGTTTATGTGAATGCCAAGCAGTACCACGGAATTCTGAGGCGAAGACAGTCACGTGCCAAGGCTGAACTGGAAAAGAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGGGGTTGTGGAGGCCGTTTTCTCAACACGAAGAAGAATGACTGTGATGCAGCTAACCCCACATCTGAGAAGGGCATGGCTTCTGGTGCAGCCGCCTCTACACACTCAGCCAGCTCATCTGGTTCTGAACCATTGCCCTCCGACTGTCATGGAAATGTGGATTCCTCTAGTGGTCGGCAAGAACCACATGCATATTCCAATGGCAATGGCAATGGCAATGGCTGCTACCAACATCACCAGGGCTTCCCTGTGTCAACATTTCATTCCCTCTCGGGTGAGAGAGGGGAGGAAGGAGTGTGCTCAGGCCAGCAGCGGGGAAGCATCGCAGTGAACCGGGCCCCACACAGGGCCCTCACCATCCAATGA 1041 0.4995 MQSKPETSNPLGPNAHNIPPSTICSQPWWRGIAYNAVPPAVLGESASKSSSLELPDGGMGTKAGQSQADGAPDDGDGVNKEMQTTVTSQSGSDGNYGHEHQHLQHVASTIPQTCGEYIIPHAQLELVGHSIACAPYPYSDPYYGGIMTAYGTQALVHPHLLGMRHTRMPLPLEMAEEPVYVNAKQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKNDCDAANPTSEKGMASGAAASTHSASSSGSEPLPSDCHGNVDSSSGRQEPHAYSNGNGNGNGCYQHHQGFPVSTFHSLSGERGEEGVCSGQQRGSIAVNRAPHRALTIQ* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00512 346 MobiDBLite consensus disorder prediction 251 312 - -
Eupl05g00512 346 PRINTS CCAAT-binding transcription factor subunit B signature 178 200 IPR001289 GO:0003700|GO:0006355
Eupl05g00512 346 PRINTS CCAAT-binding transcription factor subunit B signature 209 232 IPR001289 GO:0003700|GO:0006355
Eupl05g00512 346 ProSiteProfiles NF-YA/HAP2 family profile. 175 235 IPR001289 GO:0003700|GO:0006355
Eupl05g00512 346 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 177 232 IPR001289 GO:0003700|GO:0006355
Eupl05g00512 346 MobiDBLite consensus disorder prediction 80 97 - -
Eupl05g00512 346 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 54 292 IPR001289 GO:0003700|GO:0006355
Eupl05g00512 346 SMART cbf3 174 235 IPR001289 GO:0003700|GO:0006355
Eupl05g00512 346 MobiDBLite consensus disorder prediction 1 22 - -
Eupl05g00512 346 MobiDBLite consensus disorder prediction 47 97 - -
Eupl05g00512 346 Gene3D - 175 236 - -
Eupl05g00512 346 MobiDBLite consensus disorder prediction 214 332 - -
Eupl05g00512 346 ProSitePatterns NF-YA/HAP2 subunit signature. 180 200 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00512 Eupl-Chr5 21660400 21676954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00512 1 281 CCAAT-HAP2 Transcription Factor Family AT5G12840 44.523 4.37e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Eupl05g00512 CBFB_NFYA 7.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00512 K08064 - nnu:104612996 478.789