Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00501 ATGATCTGCCTGTCTCTTCAGTGTCGGAGAAGAAAGAATACCCAGTTGATCCATCTCTACCTGACATCAAGAACAGCATATATACGACCTGATGAGTTCCGCATGTTCTCGTTCAAGGTCCGACCGTGTTCACGGGCCTATTCCCATGACTGGACCGAGTGCCCATTTGTTCATCCTGGTGAGAATGCTCGGAGGAGAGACCCTAGGAAGTTCCACTACAGCTGCGTTCCTTGTCCCGATTTCCGAAAGGGAGCATGCAGGCGAGGTGATTTGTGTGAGTATGCCCATGGGGTTTTTGAGTGCTGGCTACACCCGGCACAGTACAGGACACGGCTGTGCAAGGATGGCACAAGCTGCATGCGGCGAGTTTGTTTCTTTGCACACACATCTGAGGAGCTCCGCCCCCTCTATGTTTCCACTGGCTCAGCTGTTCCTTCTCCCCGCTCCACTGCCTCTGCTGCCACTGCCATGGAGATGGCTGCGGCTATGAGCCTCTTGCCCGGCTCTCCATCTTCAGTATCTGTCATGTCGCCTTCTCCATTCACACCACCCATGTCTCCATCAGCCAATGGCATGTCACACTCATCCTTGGCTTGGCCACAGCCGAATGTTCCAACCTTGCATCTCCCCGGAAGCAATCTTCAATCCAGTCGTCTGAGATCTTCCCTGAATGCAAGAGACATACCGGCTGAGGAATACATGTTGCCAGATTTTGAAGCGCAACAACAGCAGCTAATCAATGACTTGTCGTGTTTCTCACAACCGCGTCTAAGTTCTACCTCTGTGAATCGTCCTGTTCGGTCAAAAACCCTAAACCCGTCAAACCTTGAAGATCTCTTCAGTGCAGAAATCTCTTCATCGCCTCGCTATTCTGATCAGGCTGCAGCATCAGCTGTCTTCTCTCCATCGCACAAATCAGCTGTCCTCAATCAATTCCAGCAGCAACAGAGCATGTTATCACCAATCAACACAAACGTATTCTCTCCCAAAAATGTTGATCACGCTCTCTTGCAGGCCACATTTGGTGTTCCCTCCCCAGGGAGGATGTCACCCCGCAGCGTGGAGCCTATCTCACCAATGAGCTCAAGGTTGACAGCATTTGCCCAACGCGAGAAACAGCAGCAACAACTACGCAGCCTTAGCTCTCGTGACCTTGGATGCAATGCTGCTGGCACTGTAGGATCTCCTGTGAATTCGTGGTCGAAGTGGGGGTCTCCAAATGGGAAATTAGATTGGGCTGTTCACGGGGATGAACTGGGTCGGTTCAGGAGATCATCTTCGTTTGAGCTAGGAAACAACGGAGAGGAGCCCGATCTATCATGGGTTCAGTCACTGGTGAAGGAATCTCCCCCGGAGATGAAAGAAAAGCTGGTGGTGCCAACATCGACTGCAGCATCGTCCAGCGAAGGTTCAAATTCAAATTCTCAGATTGAGCCCATTGATCACTCGGTTTTGGGAGCTTGGCTCGAGCAGATGCAGCTTGATCAGCTCGTTGCTTAG 1500 0.5147 MICLSLQCRRRKNTQLIHLYLTSRTAYIRPDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTSCMRRVCFFAHTSEELRPLYVSTGSAVPSPRSTASAATAMEMAAAMSLLPGSPSSVSVMSPSPFTPPMSPSANGMSHSSLAWPQPNVPTLHLPGSNLQSSRLRSSLNARDIPAEEYMLPDFEAQQQQLINDLSCFSQPRLSSTSVNRPVRSKTLNPSNLEDLFSAEISSSPRYSDQAAASAVFSPSHKSAVLNQFQQQQSMLSPINTNVFSPKNVDHALLQATFGVPSPGRMSPRSVEPISPMSSRLTAFAQREKQQQQLRSLSSRDLGCNAAGTVGSPVNSWSKWGSPNGKLDWAVHGDELGRFRRSSSFELGNNGEEPDLSWVQSLVKESPPEMKEKLVVPTSTAASSSEGSNSNSQIEPIDHSVLGAWLEQMQLDQLVA* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00501 499 PANTHER UNKEMPT FAMILY MEMBER 30 449 IPR045234 -
Eupl05g00501 499 SMART c3hfinal6 72 98 IPR000571 GO:0046872
Eupl05g00501 499 SMART c3hfinal6 107 130 IPR000571 GO:0046872
Eupl05g00501 499 MobiDBLite consensus disorder prediction 460 478 - -
Eupl05g00501 499 Gene3D - 73 135 - -
Eupl05g00501 499 ProSiteProfiles Zinc finger C3H1-type profile. 77 99 IPR000571 GO:0046872
Eupl05g00501 499 MobiDBLite consensus disorder prediction 450 478 - -
Eupl05g00501 499 FunFam Zinc finger CCCH domain-containing protein 66 30 98 - -
Eupl05g00501 499 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 97 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00501 Eupl-Chr5 21265142 21269996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00501 24 496 C2H2 Transcription Factor Family AT5G12850 57.755 8.20e-178 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl05g00501 zf-CCCH 9.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00501 - - nnu:104613007 793.112