Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00495 ATGAGGAAGCCTGATCCCCCGGGGAAGAACAGTTCTAACAATAATAACAAGAAGCTAAGGAAGGGTTTGTGGTCGCCTGAAGAAGATGACAAGCTCATGAACTATATGTTGAGCAATGGTCAAGGTTGTTGGAGCGACGTTGCAAGAAATGCTGGCTTGCAGAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATTAATTATTTGAGGCCTGATCTCAAGCGTGGGGCTTTCTCACCCCAGGAAGAAGAGCTCATTATCCATTTGCATTCCATCCTTGGCAACAGGTGGTCACAGATTGCGGCACGCTTGCCTGGACGAACCGACAACGAAATAAAGAATTTTTGGAATTCCACAATAAAGAAAAGGCTGAAGAACTCATCAACATCACCCTCACCAAACAACAGTGATTCATCTGAGCATAGAGATGTTATGGGAGGGCTGATGTCCATGAACAAACATGATCACATCATGACTATGTACATAGATTCGTCGTCGACGTCATCAACATCCATGCAAGCTATGGCTATGAGCAATCATCAGTTTGATCCATTGCCTCTGCTTGAGAACAGCTATGATGTGTGTGGTGGTGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGATACTTTAATGTCTCCACATGCTTAACACAAGTGGGTGTGGTGAATGGGTTGTATGGGGGGCATGGTATGGGTATGATAGGGTGTAGTAATAACATGGGAGTAGAAGGGGAGCTATTTGTTCCCCCTTTAGAGAGTATAAGCATAGAAGAGAATACTACTACTGACAAGAACACCAATAACGAACATATTAATAATAATATTAAGAACATCACCACCAACAACAACAACAACTACAACTACAACAACAATAACAAATTAGAGGACTTGGTGGGGGGAGGGAATTATTGGGAAGGAGAAAACTTAAGAATGGGGGAATGGGATTTGGAGGATTTGATGGAAGATGTCTCCTCTTTTCCTTTCCTTGATTTCCAAGTTGAATAA 1005 0.4368 MRKPDPPGKNSSNNNNKKLRKGLWSPEEDDKLMNYMLSNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNSSTSPSPNNSDSSEHRDVMGGLMSMNKHDHIMTMYIDSSSTSSTSMQAMAMSNHQFDPLPLLENSYDVCGGGGGGGGGGGGGGYFNVSTCLTQVGVVNGLYGGHGMGMIGCSNNMGVEGELFVPPLESISIEENTTTDKNTNNEHINNNIKNITTNNNNNYNYNNNNKLEDLVGGGNYWEGENLRMGEWDLEDLMEDVSSFPFLDFQVE* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00495 334 Gene3D - 75 145 - -
Eupl05g00495 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Eupl05g00495 334 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Eupl05g00495 334 CDD SANT 76 116 IPR001005 -
Eupl05g00495 334 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Eupl05g00495 334 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Eupl05g00495 334 Gene3D - 18 74 - -
Eupl05g00495 334 MobiDBLite consensus disorder prediction 122 143 - -
Eupl05g00495 334 FunFam Transcription factor MYB46 75 143 - -
Eupl05g00495 334 PANTHER MYB DOMAIN PROTEIN 55 12 291 - -
Eupl05g00495 334 FunFam MYB transcription factor 18 74 - -
Eupl05g00495 334 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Eupl05g00495 334 CDD SANT 24 68 IPR001005 -
Eupl05g00495 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Eupl05g00495 334 MobiDBLite consensus disorder prediction 1 23 - -
Eupl05g00495 334 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Eupl05g00495 334 SMART sant 73 121 IPR001005 -
Eupl05g00495 334 SMART sant 20 70 IPR001005 -
Eupl05g00495 334 MobiDBLite consensus disorder prediction 122 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00495 Eupl-Chr5 21147588 21149932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00495 1 334 MYB Transcription Factor Family AT3G08500 46.467 2.44e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl05g00495 Myb_DNA-binding 8.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00495 K09422 - ming:122088801 413.69