Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00486 ATGGAGGGAGGAAAGACCAACAAGAAATCCCCTGCAATTTCTCTTCAGCAATTCGTCTCGATCATGGCTCCCCTAATCGATCTGGAAAAGGAAGCCGAGATATCGGCCTCCATCAGTTCGGGCTCGTCGAGGAACCTCGATACTGCTCAAAAACGGGGCTCCACCATTCTTAATCTCAAGTGTGTAGATGCTCAGACAGGACTAATGGGGAAAGCTCTTCTGGAGTTTCAATCTAATAAAGGAGATGTTCTTCCTGCTCACAAGTTTGGGACTCATGATGTTGTTGTTCTAAAACCTAACAAGGCTGATTTAGGGTCTCCTTCCCTTGGACAAGGTGTAGTTTATCGTCTAAAGGACTCTTCAATCACTGTTGCGTTTGAGGATATCCCAGAAGAGGGTCTAAACAGTCCTTTACGTCTTGAGAAAGTCACAAATGAGGTAACGTACCGTAGGATGAAGGATGCCTTAATACAACTGAGCAAAGGTGTGCAGAAGGGACCTGCTGCTGACTTAATTCCTGTATTATTCGGAGAGAGACCACCGACAGTGTCAAAGAAAAATGTCACATTCACCCCATTTAACTCCAACCTTGATCATTCTCAGAAAGATGCCATTTCAAAGGCCCTTTCATCCAAGAATGTATTTTTGCTGCATGGGCCTCCAGGAACTGGAAAAACAACAACAGTTGTGGAGATTATCTTACAGGAAGTGAAACGTGGATCAAAGATTCTTGCATGTGCTGCTTCTAATATTGCAGTGGACAACATTGTTGAGCGACTTGTTCCTCACAGAGTAAAGCTGGTGAGATTGGGGCATCCTGCACGTTTGCTACCTCAAGTATTGGAGAGTGCACTAGATGCCCAGGTTTTACGAGGGGATAACAGTGCTCTTGCAAATGACATTCGCAAGGAAATGAAGGCTCTGAATGGGAAGCTGTTGAAAACTAAAGATAGAAATACAAGAAGGGACATCAAGAAGGAGCTCAGAACTCTTTCCAAGGAAGAACGGAAAAGGCAGCAGCAAGCTGTCATGGATGTAATAAAAAATGCAGATGTGGTATTGACAACTTTGACCGGTGCATTCTCTTACAAACTTGAGAGCACTTCATTTGATTTGGTGATAATCGATGAAGCTGCTCAGGCGCTCGAGATAGCATGCTGGTTAGCTTTGCTAAAGGGTTCAAGATGTATACTTGCAGGAGACCATCTTCAACTTCCCCCAACCATACAAAGTGTTGAAGCTGAGAGAAAAGGCTTAGGAATAACTCTCTTTGAACGTCTAGCAGGTTTGTATGGAGATGAAGTCATGGCCATGCTCACTGTCCAGTACCGCATGCATGAGCTTATAATGGACTGGTCATCTAAAGAGCTGTATGATTGTAAGATAAAAGCTCATCCTAGTGTTGCTGCACATATGCTTTATGATATCGATGATGTGAAGAAGTCTTCTTCAGCAGAACCTACCCTTCTTCTCGTAGACATAGCTGGGTGTGACATGGAAGAAAAAAAGGATGAAGAAGAAAGCACAATGAATGAGGGTGAGGCTGAGGTTGCTATAGCCCATGCAAAGAGACTTGTTCAGAGTGGGGTCCAGTCATCTGATATTGGAATTATCACCCCTTATGCTGCACAGGTTGTCTTGCTGAAGATGATGAGAAGCAAAGAAGATAAACTAAAGGGGATGGAGATATCTACAGTTGATGGCTTCCAAGGTCGAGAGAAAGAAGCCATTATCATTTCCATGGTCCGATCGAACTCAAAGAAAGAGGTGGGGTTTCTGAGCGATCGGAGGCGAATGAACGTGGCTGTGACACGTGCAAGGAGACAGTGTTGTCTTGTATGCGATACAGAGACTGTGAGTAGTGATGGGTTCTTGAAGCGATTGATTGAGTATTTCGAGGAGCATGGTGAATATTTGAGTGCATCGGAGTATGGGAATGAATAA 1944 0.4408 MEGGKTNKKSPAISLQQFVSIMAPLIDLEKEAEISASISSGSSRNLDTAQKRGSTILNLKCVDAQTGLMGKALLEFQSNKGDVLPAHKFGTHDVVVLKPNKADLGSPSLGQGVVYRLKDSSITVAFEDIPEEGLNSPLRLEKVTNEVTYRRMKDALIQLSKGVQKGPAADLIPVLFGERPPTVSKKNVTFTPFNSNLDHSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLESALDAQVLRGDNSALANDIRKEMKALNGKLLKTKDRNTRRDIKKELRTLSKEERKRQQQAVMDVIKNADVVLTTLTGAFSYKLESTSFDLVIIDEAAQALEIACWLALLKGSRCILAGDHLQLPPTIQSVEAERKGLGITLFERLAGLYGDEVMAMLTVQYRMHELIMDWSSKELYDCKIKAHPSVAAHMLYDIDDVKKSSSAEPTLLLVDIAGCDMEEKKDEEESTMNEGEAEVAIAHAKRLVQSGVQSSDIGIITPYAAQVVLLKMMRSKEDKLKGMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHGEYLSASEYGNE* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00486 647 Coils Coil 298 318 - -
Eupl05g00486 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 633 IPR027417 -
Eupl05g00486 647 CDD SF1_C_Upf1 445 633 IPR047187 -
Eupl05g00486 647 CDD DEXXQc_SMUBP2 196 444 - -
Eupl05g00486 647 Pfam AAA domain 421 616 IPR041679 -
Eupl05g00486 647 FunFam DNA-binding protein SMUBP-2 41 143 - -
Eupl05g00486 647 NCBIfam IGHMBP2 family helicase 343 640 IPR004483 GO:0003677|GO:0005524
Eupl05g00486 647 Gene3D - 41 143 - -
Eupl05g00486 647 Gene3D - 24 427 IPR027417 -
Eupl05g00486 647 FunFam P-loop containing nucleoside triphosphate hydrolase 443 647 - -
Eupl05g00486 647 Gene3D - 443 647 IPR027417 -
Eupl05g00486 647 Pfam AAA domain 197 411 IPR041677 GO:0004386
Eupl05g00486 647 SMART AAA_5 211 428 IPR003593 GO:0016887
Eupl05g00486 647 SMART ultradead3 193 424 IPR014001 -
Eupl05g00486 647 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 17 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00486 Eupl-Chr5 20744642 20756292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00486 138 380 Core DNA Replication Machinery Family AT1G08840 27.016 5.22e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00486 - - zju:107403746 1117.45