Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl05g00478 | ATGGATTCACAGGCGCAGCAGCAATGGATGATGAGCGCTCAGCCTCAACCCCCGCAAGCAACAACATGGGGCGCACCTTCTCAACCCTACCATCAACCCGCCACCGTCGAAGAGATCAGAACTCTCTGGATTGGTGATCTACAATACTGGGTCGATGAAAGCTACCTCCAGGGTTGCTTCGCTCACACTGGAGAGGTGCTTTCGATAAAAATCATACGTAACAAGATCACTGGACAACCTGAAGGTTATGGGTTTGTGGAGTTCGTTTCTCACGCTGCGGCAGAACGGATTCTCCAAACATACAATGGAACACAGATGCCTGGAACTGAACAAACATTTAGGTTGAATTGGGCTTCTTTCGGGATTGGAGAAAGACGCCCTGAAGCTGGACCTGAGCACTCAATTTTTGTAGGCGATTTAGCACCAGACGTTACAGATTATTTGTTGCAAGAGACTTTTCGAGCTCAATATCCATCAGTGAGAGGTGCTAAGGTTGTAACTGATCCGAATACTGGACGTTCGAAGGGTTATGGGTTTGTTAAATTTTCTGATGAGATGGAAAGAAACCGTGCTATGACCGAAATGAATGGGGTGTATTGCTCAACCAGGCCAATGCGTATCAGTGCGGCAACTCCAAAGAAGACCACTGGTTTTCAGCAGCAATACACAGCAGCTAAAGCCGTATATCCAGCACCAGCTTACAGCACACCAGCGGTGCAGGCAATTCCAGCAGCAGACAATGATATCAATAACACAACTATATTCGTTGGTGGTTTGGACCCTAATGTCACAGATGAGGAACTGAGGCAAATCTTTGCACAGTTTGGGGAGCTTGTCTATGTTAAGATACCGCCTGGTAAAGGATGTGGCTTTGTACAGTTTGGGACTAGGGCATCTGCTGAAGAAGCAATTCAAAGGTTGCATGGAACTATGATTGGTCAACAAACCGTCCGCCTTTCATGGGGTAGAAGCCCAACAACTAAACAGGACCAGCCTGGTGCCTGGGGTCAGCAAGCAGATCCCAGTCAATGGAGTGGCGCTTATTACGGTTATGGACAGGGTTATGATGCCTATGCTTATGGGGCTACTCAAGACCCATCTTTATATGCCTATGGTGCATACGCTGGATATGGACAATACCCTCAACAGGCGGAAGGCATTCAAGAAATGGCATCTATGGCGGGTGCAGTCCCAGCTGTGGAACAAAGGGAGGAACTATATGATCCTTTGGCTACACCTGATGTTGATAAGTTAAATGCAGCTTACCTCGCTGTCCATGGAAGAGCCATGGTGGGGCGACCCTTATGGTTGAAAACAGCACTCTCACAGCAAACATAG | 1338 | 0.4783 | MDSQAQQQWMMSAQPQPPQATTWGAPSQPYHQPATVEEIRTLWIGDLQYWVDESYLQGCFAHTGEVLSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPEAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGFQQQYTAAKAVYPAPAYSTPAVQAIPAADNDINNTTIFVGGLDPNVTDEELRQIFAQFGELVYVKIPPGKGCGFVQFGTRASAEEAIQRLHGTMIGQQTVRLSWGRSPTTKQDQPGAWGQQADPSQWSGAYYGYGQGYDAYAYGATQDPSLYAYGAYAGYGQYPQQAEGIQEMASMAGAVPAVEQREELYDPLATPDVDKLNAAYLAVHGRAMVGRPLWLKTALSQQT* | 446 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl05g00478 | 445 | FunFam | polyadenylate-binding protein RBP45 | 236 | 332 | - | - | |
Eupl05g00478 | 445 | FunFam | Polyadenylate-binding protein RBP47B | 124 | 223 | - | - | |
Eupl05g00478 | 445 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Eupl05g00478 | 445 | Gene3D | - | 121 | 224 | IPR012677 | - | |
Eupl05g00478 | 445 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 133 | 212 | IPR000504 | GO:0003723 | |
Eupl05g00478 | 445 | CDD | RRM2_SECp43_like | 132 | 211 | - | - | |
Eupl05g00478 | 445 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 31 | 328 | - | - | |
Eupl05g00478 | 445 | CDD | RRM1_SECp43_like | 41 | 121 | - | - | |
Eupl05g00478 | 445 | CDD | RRM3_NGR1_NAM8_like | 251 | 322 | - | - | |
Eupl05g00478 | 445 | Gene3D | - | 239 | 334 | IPR012677 | - | |
Eupl05g00478 | 445 | SMART | rrm1_1 | 134 | 208 | IPR000504 | GO:0003723 | |
Eupl05g00478 | 445 | SMART | rrm1_1 | 41 | 116 | IPR000504 | GO:0003723 | |
Eupl05g00478 | 445 | SMART | rrm1_1 | 253 | 320 | IPR000504 | GO:0003723 | |
Eupl05g00478 | 445 | FunFam | Polyadenylate-binding protein RBP45 | 1 | 123 | - | - | |
Eupl05g00478 | 445 | SUPERFAMILY | RNA-binding domain, RBD | 235 | 354 | IPR035979 | GO:0003676 | |
Eupl05g00478 | 445 | Gene3D | - | 39 | 119 | IPR012677 | - | |
Eupl05g00478 | 445 | SUPERFAMILY | RNA-binding domain, RBD | 39 | 214 | IPR035979 | GO:0003676 | |
Eupl05g00478 | 445 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 252 | 324 | IPR000504 | GO:0003723 | |
Eupl05g00478 | 445 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 40 | 120 | IPR000504 | GO:0003723 | |
Eupl05g00478 | 445 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 254 | 317 | IPR000504 | GO:0003723 | |
Eupl05g00478 | 445 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 135 | 199 | IPR000504 | GO:0003723 | |
Eupl05g00478 | 445 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 42 | 110 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl05g00478 | Eupl-Chr5 | 20504388 | 20538127 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl05g00478 | 134 | 317 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 29.101 | 4.85e-16 | 78.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl05g00478 | - | - | ming:122088093 | 759.599 |