Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00478 ATGGATTCACAGGCGCAGCAGCAATGGATGATGAGCGCTCAGCCTCAACCCCCGCAAGCAACAACATGGGGCGCACCTTCTCAACCCTACCATCAACCCGCCACCGTCGAAGAGATCAGAACTCTCTGGATTGGTGATCTACAATACTGGGTCGATGAAAGCTACCTCCAGGGTTGCTTCGCTCACACTGGAGAGGTGCTTTCGATAAAAATCATACGTAACAAGATCACTGGACAACCTGAAGGTTATGGGTTTGTGGAGTTCGTTTCTCACGCTGCGGCAGAACGGATTCTCCAAACATACAATGGAACACAGATGCCTGGAACTGAACAAACATTTAGGTTGAATTGGGCTTCTTTCGGGATTGGAGAAAGACGCCCTGAAGCTGGACCTGAGCACTCAATTTTTGTAGGCGATTTAGCACCAGACGTTACAGATTATTTGTTGCAAGAGACTTTTCGAGCTCAATATCCATCAGTGAGAGGTGCTAAGGTTGTAACTGATCCGAATACTGGACGTTCGAAGGGTTATGGGTTTGTTAAATTTTCTGATGAGATGGAAAGAAACCGTGCTATGACCGAAATGAATGGGGTGTATTGCTCAACCAGGCCAATGCGTATCAGTGCGGCAACTCCAAAGAAGACCACTGGTTTTCAGCAGCAATACACAGCAGCTAAAGCCGTATATCCAGCACCAGCTTACAGCACACCAGCGGTGCAGGCAATTCCAGCAGCAGACAATGATATCAATAACACAACTATATTCGTTGGTGGTTTGGACCCTAATGTCACAGATGAGGAACTGAGGCAAATCTTTGCACAGTTTGGGGAGCTTGTCTATGTTAAGATACCGCCTGGTAAAGGATGTGGCTTTGTACAGTTTGGGACTAGGGCATCTGCTGAAGAAGCAATTCAAAGGTTGCATGGAACTATGATTGGTCAACAAACCGTCCGCCTTTCATGGGGTAGAAGCCCAACAACTAAACAGGACCAGCCTGGTGCCTGGGGTCAGCAAGCAGATCCCAGTCAATGGAGTGGCGCTTATTACGGTTATGGACAGGGTTATGATGCCTATGCTTATGGGGCTACTCAAGACCCATCTTTATATGCCTATGGTGCATACGCTGGATATGGACAATACCCTCAACAGGCGGAAGGCATTCAAGAAATGGCATCTATGGCGGGTGCAGTCCCAGCTGTGGAACAAAGGGAGGAACTATATGATCCTTTGGCTACACCTGATGTTGATAAGTTAAATGCAGCTTACCTCGCTGTCCATGGAAGAGCCATGGTGGGGCGACCCTTATGGTTGAAAACAGCACTCTCACAGCAAACATAG 1338 0.4783 MDSQAQQQWMMSAQPQPPQATTWGAPSQPYHQPATVEEIRTLWIGDLQYWVDESYLQGCFAHTGEVLSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPEAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGFQQQYTAAKAVYPAPAYSTPAVQAIPAADNDINNTTIFVGGLDPNVTDEELRQIFAQFGELVYVKIPPGKGCGFVQFGTRASAEEAIQRLHGTMIGQQTVRLSWGRSPTTKQDQPGAWGQQADPSQWSGAYYGYGQGYDAYAYGATQDPSLYAYGAYAGYGQYPQQAEGIQEMASMAGAVPAVEQREELYDPLATPDVDKLNAAYLAVHGRAMVGRPLWLKTALSQQT* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00478 445 FunFam polyadenylate-binding protein RBP45 236 332 - -
Eupl05g00478 445 FunFam Polyadenylate-binding protein RBP47B 124 223 - -
Eupl05g00478 445 MobiDBLite consensus disorder prediction 1 29 - -
Eupl05g00478 445 Gene3D - 121 224 IPR012677 -
Eupl05g00478 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 212 IPR000504 GO:0003723
Eupl05g00478 445 CDD RRM2_SECp43_like 132 211 - -
Eupl05g00478 445 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 31 328 - -
Eupl05g00478 445 CDD RRM1_SECp43_like 41 121 - -
Eupl05g00478 445 CDD RRM3_NGR1_NAM8_like 251 322 - -
Eupl05g00478 445 Gene3D - 239 334 IPR012677 -
Eupl05g00478 445 SMART rrm1_1 134 208 IPR000504 GO:0003723
Eupl05g00478 445 SMART rrm1_1 41 116 IPR000504 GO:0003723
Eupl05g00478 445 SMART rrm1_1 253 320 IPR000504 GO:0003723
Eupl05g00478 445 FunFam Polyadenylate-binding protein RBP45 1 123 - -
Eupl05g00478 445 SUPERFAMILY RNA-binding domain, RBD 235 354 IPR035979 GO:0003676
Eupl05g00478 445 Gene3D - 39 119 IPR012677 -
Eupl05g00478 445 SUPERFAMILY RNA-binding domain, RBD 39 214 IPR035979 GO:0003676
Eupl05g00478 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 324 IPR000504 GO:0003723
Eupl05g00478 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 120 IPR000504 GO:0003723
Eupl05g00478 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 317 IPR000504 GO:0003723
Eupl05g00478 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 199 IPR000504 GO:0003723
Eupl05g00478 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00478 Eupl-Chr5 20504388 20538127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00478 134 317 Eukaryotic Initiation Factors Gene Family AT4G34110 29.101 4.85e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00478 - - ming:122088093 759.599