Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00473 ATGGGAAACACGCAACAAAATCTAAGGCATTTGCATGAGAATTCCCGAGAAGAAGAAGAATTTTCGAGCTTCACTTGTGAGATTTGCGTAGAACCCGTGCCTCCAAACAAGAAATTCAAGAACAAGAACAAGAACAAGAACAACTGTTGCTTTCATCCATATTGTTCGGATTGTATTGCCAAATACGTCGAAGTAAAAGTTAAAGAAAACGCATCAGAGATAAAATGCCCTGATCCAACTTGTAAGAATTTTCTGGACGCTGTCGCATGCCGCTCAATCCTCCCGACTAGAGTTTTCGAGAAATGGTGTGATGTACTGTGCGAGTCAACAATTTTACAATGGGATACAGCTTTCTGCCCTTTCCCTGATTGCTCAGTTCTGATCGTAAATGAGTGTGGGGGAAACGTTAGAAGATCAAAGTGCCCAAAGTTTGCTGTTGGTCCCGTATCTCCATCTGCTAATGAATACGAGTCACCTCCTCCTGGTGACGAGTCTCACGCTCTGTCATTTGTACTTGCAGTCGTGTCAACTCCTCTTGAAGGGCACTGTTGTTGCTACTCCGACTGGAGGTATTGA 576 0.4375 MGNTQQNLRHLHENSREEEEFSSFTCEICVEPVPPNKKFKNKNKNKNNCCFHPYCSDCIAKYVEVKVKENASEIKCPDPTCKNFLDAVACRSILPTRVFEKWCDVLCESTILQWDTAFCPFPDCSVLIVNECGGNVRRSKCPKFAVGPVSPSANEYESPPPGDESHALSFVLAVVSTPLEGHCCCYSDWRY* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00473 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 113 IPR013083 -
Eupl05g00473 191 FunFam RBR-type E3 ubiquitin transferase 21 113 - -
Eupl05g00473 191 ProSiteProfiles Zinc finger RING-type profile. 26 77 IPR001841 -
Eupl05g00473 191 SUPERFAMILY RING/U-box 22 114 - -
Eupl05g00473 191 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Eupl05g00473 191 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 18 142 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00473 Eupl-Chr5 20131011 20138989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00473 50 135 C3H Transcription Factor Family AT2G31770 29.032 1.92e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00473 K11975 - han:110938201 151.754