Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00472 ATGTATTATATGTATCCAATTTTCGGATCGGATATATATTATCGGATATCCGTCGGATATCGAATCGGATTCGGATTCGGATATGCTTATATTCGATCCGAATACCGCAGCAGCGGCTTGAAGCTCTCTGAACTGATCGTCGGAAGGAGAAAACTCTTATCGGACAAAGAAACACAGGGTCCGGATCGTGCTTTTGATGTTGTTTCGCCCTCTGCAAGATCAAGGTTTTTTTTAGTTTTTTTCCTTTCAAAAGCTCCCAAAATGAAAAAAAAAACCATGGGAAACGCACAACAAACGCCGAGGCATTTGTATGAAAATTCCCAAGAAGAAGAGGAAGTTTTGAGCTTTACATGTGAGATTTGCATAGAACCCACGTCTCCAAACAAGAAATTCAAGAACAAGAACAAGAACAAGAACAACTGCTGCTCTCATCCATTTTGCTTGGATTGTATAGCCAAGTACATTGAAGTAAAAGTTGAAGAAAACACATCCGAGATAAAATGCCCTGATTCAAATTGTAAGTTTTTTTTGGACGCGGTCGCATGCCGATCAATCCTCCCCACAAGAGTATTCGAGAAATGGTGTGATTTACTCTGCGAGTCAAAAGTCTTACAGTGCGAGAGAGCTTACTGCCCTTACCCGAATTGTTCAGTGCTGATCATAAATGAGTGTGGGGGGAGTGTTAGAAGATCAAAGTGCCCAAATTGTAAGAATCTGTTCTGTTTTCAGTGCAAGCTTCCATGGCATGAGGGTCGTCGGTGCAATGGGAGCGGAGAGATGAGAGATAGAGACGACCTTCTCTTCAGCCAACTGGCGGAGATGAAGAGATGGACTAGATGTCCAACTTGCCACCATTATGTGGAGCTGGTTCGTGGTTGCACAGTCGTTAAATGCAGATGTCAGACCGTTTTTTGCTATGCTTGTGGAAGAAAACTCTCTTCAAGATTAATGATATGTGGATGCAAGAATAATAGAGCGATCTACATACTTACCATTTTTATGTTGTCATTTTGCACTCTTCTGGTAATGGTGATGATGATTTTAAGAATGGCTGGTGTGTATTTAATAAAATAA 1074 0.4115 MYYMYPIFGSDIYYRISVGYRIGFGFGYAYIRSEYRSSGLKLSELIVGRRKLLSDKETQGPDRAFDVVSPSARSRFFLVFFLSKAPKMKKKTMGNAQQTPRHLYENSQEEEEVLSFTCEICIEPTSPNKKFKNKNKNKNNCCSHPFCLDCIAKYIEVKVEENTSEIKCPDSNCKFFLDAVACRSILPTRVFEKWCDLLCESKVLQCERAYCPYPNCSVLIINECGGSVRRSKCPNCKNLFCFQCKLPWHEGRRCNGSGEMRDRDDLLFSQLAEMKRWTRCPTCHHYVELVRGCTVVKCRCQTVFCYACGRKLSSRLMICGCKNNRAIYILTIFMLSFCTLLVMVMMILRMAGVYLIK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00472 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 205 IPR013083 -
Eupl05g00472 357 Pfam IBR domain, a half RING-finger domain 270 312 IPR002867 GO:0008270
Eupl05g00472 357 Pfam IBR domain, a half RING-finger domain 193 254 IPR002867 GO:0008270
Eupl05g00472 357 ProSiteProfiles TRIAD supradomain profile. 114 335 IPR044066 -
Eupl05g00472 357 SUPERFAMILY RING/U-box 263 323 - -
Eupl05g00472 357 ProSiteProfiles Zinc finger RING-type profile. 118 169 IPR001841 -
Eupl05g00472 357 SUPERFAMILY RING/U-box 116 201 - -
Eupl05g00472 357 Gene3D - 261 327 - -
Eupl05g00472 357 ProSitePatterns Zinc finger RING-type signature. 142 151 IPR017907 -
Eupl05g00472 357 FunFam RBR-type E3 ubiquitin transferase 114 205 - -
Eupl05g00472 357 CDD Rcat_RBR_unk 276 312 - -
Eupl05g00472 357 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 98 314 IPR031127 GO:0004842|GO:0016567
Eupl05g00472 357 SMART ibrneu5 192 254 IPR002867 GO:0008270
Eupl05g00472 357 SUPERFAMILY RING/U-box 198 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00472 Eupl-Chr5 20086512 20119146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00472 117 309 C3H Transcription Factor Family AT2G19610 27.184 4.09e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00472 K11975 - nnu:104600460 298.901