Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00453 ATGACGGACCCCTACTCCAGTTTCTTCACTGGATGGTTCAACTTCAACCCTGTCCTCCACCACTATTCCTCTTCCTCCTCCAACCCATCTCCTCCTCCTTATTCCTACAATTTTTACTCCAATAACAACAGCATCAACAACAACTATTCATATATCCACTATCAATCCCCACCTCCTTCTCCTCCTCTCAGAGAAGCTCTTCCCCTCCTCAGCCTAAGCCCAACAAGACATGAAGAAGAAGATCCCCCTTGCTGTGCCATGGAAGAGGACAAGAAAAAGTCCAAAGATGAGAGCTTCTTCTCTAGCACTGCTGATGATGAAACCGTGACTGTTGCCCTACACATAGGACTCCCCAGCCCTAGCGGTGCTGATCTGGCTTCTAGGGTCTCTTCCTCTACAGAGATTACAGATAAGGATGGAGTTAGTGTTGCTTCTGGGTACCCTACGAGCAGACTCAACAAGGGCCAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTTTCATGTCCTGTTTGCTGCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGACCTGAGTCTCTAAGGGGAACTCAACCAACAGCCATGCTTAGGCTCCCTTGCTATTGCTGTGCACCGGGGTGCAGGAACAACATCGATCACCCCAGATCGAAGCCGCTCAAGGACTTCAGAACTCTTCAGACCCATTACAAGCGAAAGCATGGAATCAAGCCCTTTATGTGCAGGAAATGCGGTAAAGCCTTTGCTGTGAGGGGTGACTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGTATTGCATATGTGGGTCAGATTTCAAGCACAAGAGGTCTTTGAAGGACCATATCAAGGCCTTTGGACATGGTCACGCAGCTTATGGTATTGACTGCTTCGAAGAAGACGATGAGCCTGCTTCCGAAATCGAACAAGACGAAGAATCCTCACAGTGA 1002 0.482 MTDPYSSFFTGWFNFNPVLHHYSSSSSNPSPPPYSYNFYSNNNSINNNYSYIHYQSPPPSPPLREALPLLSLSPTRHEEEDPPCCAMEEDKKKSKDESFFSSTADDETVTVALHIGLPSPSGADLASRVSSSTEITDKDGVSVASGYPTSRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGHGHAAYGIDCFEEDDEPASEIEQDEESSQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00453 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 276 IPR013087 -
Eupl05g00453 333 Gene3D Classic Zinc Finger 171 194 - -
Eupl05g00453 333 MobiDBLite consensus disorder prediction 74 95 - -
Eupl05g00453 333 Gene3D Classic Zinc Finger 233 310 - -
Eupl05g00453 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 199 IPR013087 -
Eupl05g00453 333 SMART c2h2final6 282 305 IPR013087 -
Eupl05g00453 333 SMART c2h2final6 172 194 IPR013087 -
Eupl05g00453 333 SMART c2h2final6 256 276 IPR013087 -
Eupl05g00453 333 SUPERFAMILY beta-beta-alpha zinc fingers 237 276 IPR036236 -
Eupl05g00453 333 PANTHER ZINC FINGER PROTEIN WIP2 35 330 IPR043584 GO:0003700|GO:0010468
Eupl05g00453 333 ProSitePatterns Zinc finger C2H2 type domain signature. 174 194 IPR013087 -
Eupl05g00453 333 FunFam Zinc finger protein WIP2 225 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00453 Eupl-Chr5 19207514 19209714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00453 1 333 C2H2 Transcription Factor Family AT3G57670 62.078 5.49e-153 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl05g00453 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00453 - - nnu:104590092 543.888