Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00448 ATGTCAAGGAGGGTTCTTTGCAAGTTCTTTGTACATGGAGCGTGTCTAAAAGGGGAGCACTGTGAGTTCTCACATGATTGGAAGGACCAAGCAAATAATATATGCACCTTCTATCAGAAAGGAGTGTGCTCTTATGGTAGTCGATGCAGATATGAACATGTTAAAGCTTCTCGTCCACAGAATTCTGTCTCATCATCATCATCAAAGTCACACCAGCTTATAGCTTCAGATTCTGTTCAAGTCATCCATCCTTCCAGAATTTCCTTGAGTGAAGAGTCCACTCCAGTCTTGAGTGTTCCTGCAGTGCTTTCAGCCTTGAGTAAACCTTTCTTCCCTCCAGGCACACAAGTATGGAATCAAGATTCTGGTGATTCTAGCTTCTTAGAGAATGAGAATGGCGGGGAGTCTACAACCATTGACCCTGCTGACCAGCCTATTTGTTCGTTTGCCGCTGCTGGTAATTGTCCTCGTGGGGAAAGATGCCCACATATTCATGGGAACTTATGTCCCACCTGCAGAAAATATTGTTTGCATCCATTCAGGCCTGATGAAAGAGAGGAGCACATTAAAACATGCGAGAGAAAGGAAAAACACCTCGAGGCACTTAAACATAGTCAGGAAATAGAGTGCAGTGTGTGCCTGGATCGTGTGCTTTTAAAGCCCACAGCTGCTGAACGGAAGTTTGGATTGCTATCAGAATGTGATCATCCATTCTGCATATCATGTATCAGGAATTGGCGTAGTAATTCCCCCACCTCTGGCATGGATGTCAATACTGCATTAAGGGCCTGCCCAATATGTCGCAAGATCTCATACTTTGTCATTCCAAGTATGATTTGGTATTCTTCAAAAGATGAAAAGCAGGAGATTGTTGACAGCTATAAAGCGAAACTCAGGTCTATTGACTGCAGGTACTTTGACTTTGGAAATGGGACATGCCCCTTTGGGACCAGTTGTTTCTACAAGCATGCATATCGTGATGGCCGTCTGGAAGAAGTGGATCTGCGGCATCTTGGAGCGGAAGATGGAAACACGGTCATAGCCAAAGATGTTAGGCTTTCTGACTTCCTTAGTAACTTGCATCTAAGGTGA 1092 0.4432 MSRRVLCKFFVHGACLKGEHCEFSHDWKDQANNICTFYQKGVCSYGSRCRYEHVKASRPQNSVSSSSSKSHQLIASDSVQVIHPSRISLSEESTPVLSVPAVLSALSKPFFPPGTQVWNQDSGDSSFLENENGGESTTIDPADQPICSFAAAGNCPRGERCPHIHGNLCPTCRKYCLHPFRPDEREEHIKTCERKEKHLEALKHSQEIECSVCLDRVLLKPTAAERKFGLLSECDHPFCISCIRNWRSNSPTSGMDVNTALRACPICRKISYFVIPSMIWYSSKDEKQEIVDSYKAKLRSIDCRYFDFGNGTCPFGTSCFYKHAYRDGRLEEVDLRHLGAEDGNTVIAKDVRLSDFLSNLHLR* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00448 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 278 IPR013083 -
Eupl05g00448 363 Pfam RNA-binding, Nab2-type zinc finger 302 324 - -
Eupl05g00448 363 SMART ring_2 210 267 IPR001841 -
Eupl05g00448 363 PANTHER MAKORIN-RELATED 5 344 IPR045072 GO:0000209|GO:0061630
Eupl05g00448 363 Pfam Zinc finger, C3HC4 type (RING finger) 210 267 IPR018957 GO:0046872
Eupl05g00448 363 Gene3D - 1 30 - -
Eupl05g00448 363 ProSiteProfiles Zinc finger RING-type profile. 210 268 IPR001841 -
Eupl05g00448 363 SUPERFAMILY CCCH zinc finger 31 53 IPR036855 GO:0046872
Eupl05g00448 363 SUPERFAMILY CCCH zinc finger 4 26 IPR036855 GO:0046872
Eupl05g00448 363 SUPERFAMILY RING/U-box 198 274 - -
Eupl05g00448 363 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Eupl05g00448 363 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Eupl05g00448 363 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Eupl05g00448 363 SMART c3hfinal6 142 167 IPR000571 GO:0046872
Eupl05g00448 363 SMART c3hfinal6 297 325 IPR000571 GO:0046872
Eupl05g00448 363 SMART c3hfinal6 31 55 IPR000571 GO:0046872
Eupl05g00448 363 SMART c3hfinal6 2 27 IPR000571 GO:0046872
Eupl05g00448 363 ProSiteProfiles Zinc finger C3H1-type profile. 297 326 IPR000571 GO:0046872
Eupl05g00448 363 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Eupl05g00448 363 ProSitePatterns Zinc finger RING-type signature. 234 243 IPR017907 -
Eupl05g00448 363 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Eupl05g00448 363 CDD RING-HC_MKRN 208 268 - -
Eupl05g00448 363 Gene3D - 31 169 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl05g00448 zf-C3HC4 1.4e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00448 K15687 - ming:122056960 627.476