Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00442 ATGGAGATCAAGAACGAAGAAACGAAATCGAAAATGGACGAATACGAAGTGATAGAGCAGATTGGGAGAGGAGCTTTTGGAGCTGCGTTTCTTGTTCTTCATAAAACAGAGAAAAAGAAGTACGTTTTGAAGAAGATTCGCTTGGCTAAGCAAACGGAGAAGTTCAAGCGTACAGCACATCAAGAGATGAACTTGATTGCAAAGCTAAATAACCCATATATTGTGGAGTATAAAGACGCTTGGGTGGAGAAGGGATGCTGTGTGTGCATTGTGACAAGCTACTGTGAAGGGGGAGACATGGCTGATATGATAAAGAAGGCCAGAGGAACGTTTCTTTCGGAGGAGAAACTTTGTAAATGGTTGACCCAGTTGTTGCTAGCTGTGGACTACCTGCACTCCAACCGTGTTCTCCACAGGGATCTTAAGTGCTCCAACATATTCCTTACAAAGGACAATGACGTCCGGCTTGGTGACTTTGGACTTGCAAAATTACTCATCAAAGATGACCTTGCTTCGTCGGTTGTGGGGACACCCAATTATATGTGTCCTGAGCTCCTTGCAGATATCCCTTATGGTTACAAATCAGATATTTGGTCACTTGGTTGTTGCATGTTCGAAATCGCTGCCCACCAACCTGCATTTAGAGCTCCAGACATTGCTGGATTGGTTAACAAGATAAACAGATCTTCCATTTCTCCGCTCCCAACTATGTATTCCTCTTCATTGAAGCGGTTGATCAAGAGCATGTTAAGAAAGAACCCAGAAAATAGACCAACTGCTGCAGAGCTATTGAGGCATCCATTTTTACAACCATATCTTGCTCAATGCTGCAATTTGCCTCCTGTCTTTCTACCTGTAAAGTCCACAAACAACCCAAGTGACAAATCAAACTCCAACAAATCTTCTAGCAAATCTAAATCTGGAAAAGACAACAGAAGCAGAGAGGGCAGACTTGATGCACCAAAAGAGTTAGAAAGTGTTCAGGCAATTGCAGGAAACACTGATGTGGAGCCAAGAAATTTGCTCGTCAGCGACACGTCAACATTCTCTGAGCCCAAGATAGATAAACTTGAGACCAAGAGATTTGATTCTACCAATTGTTACCCCCAAGAAGATTTGGGTCCTCGAGGTGGGTCTTCAAATGGTGAGACTACTGTTCGAAGTGGAGAAGAGCAAGTGAATCCCAACTACATCCAACAAATGAAAAGCACCGACACAGAAACCACCTCAGAGATTACACCAATTAGTCATCATGAAAATGAAGAACAGGTGTGCAACCAAAGACATTCCCAACAAGTGGAAGAGGTTGACATTGTCACAAAAGTAGTGACTACAAAAGATCCATTGCCACAGTGTGACTCAGTAGTGTTTGAGGGAGCTGACCATGATTGTGGAGGTGCTAACCGATGCTTCTCCCAGAGAACGGGAATGTCGAGTTCAGGCACAACAGGTACCTGTGTGCCCCTGGAAGATGAAGTGCCACCACCATCTTTGCAGACTATTATCCATGGAGATGATGTAAAACCCAGCTGCTGTTTGCCACAAACAGTACATCCAGTAGATGGGCATGCAGATAACACATCATCAGCAAGTACATTAACACTTCCATGTGGAGATGAAGTGGGACCCAAGACAGTTAGTCATAGCCCTTCCCAGCAAACTATAAAACAGGACATTCATGATATAGGTGGGGCTACCAATGATATCTCATTAATGAGTACCTTGAGTGTCCTTCGTAGTGATGAATTGCGAGCAGAATGGGAAAATCTGAGCTCCTTCCAGCAAAGGGCTGATGCTCTGGAGTCTCTGCTCGAGCTATGCGCACGGCTACTTCAACAGGATAGGCTCGATGAACTCGCTGGCGTGCTGAGACCATTTGGAGAAGAAGTTGTCTCGTCTAGAGAAACAGCAATCTGGTTGACAAAGAGCCTCATGAATGCACAAAAATTTGGCGGGGGAACCTAA 1965 0.4443 MEIKNEETKSKMDEYEVIEQIGRGAFGAAFLVLHKTEKKKYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKGCCVCIVTSYCEGGDMADMIKKARGTFLSEEKLCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKDNDVRLGDFGLAKLLIKDDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDIAGLVNKINRSSISPLPTMYSSSLKRLIKSMLRKNPENRPTAAELLRHPFLQPYLAQCCNLPPVFLPVKSTNNPSDKSNSNKSSSKSKSGKDNRSREGRLDAPKELESVQAIAGNTDVEPRNLLVSDTSTFSEPKIDKLETKRFDSTNCYPQEDLGPRGGSSNGETTVRSGEEQVNPNYIQQMKSTDTETTSEITPISHHENEEQVCNQRHSQQVEEVDIVTKVVTTKDPLPQCDSVVFEGADHDCGGANRCFSQRTGMSSSGTTGTCVPLEDEVPPPSLQTIIHGDDVKPSCCLPQTVHPVDGHADNTSSASTLTLPCGDEVGPKTVSHSPSQQTIKQDIHDIGGATNDISLMSTLSVLRSDELRAEWENLSSFQQRADALESLLELCARLLQQDRLDELAGVLRPFGEEVVSSRETAIWLTKSLMNAQKFGGGT* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00442 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Eupl05g00442 654 MobiDBLite consensus disorder prediction 305 322 - -
Eupl05g00442 654 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g00442 654 FunFam Serine/threonine-protein kinase Nek6 1 94 - -
Eupl05g00442 654 SUPERFAMILY Protein kinase-like (PK-like) 12 297 IPR011009 -
Eupl05g00442 654 MobiDBLite consensus disorder prediction 288 304 - -
Eupl05g00442 654 MobiDBLite consensus disorder prediction 288 324 - -
Eupl05g00442 654 Gene3D Transferase(Phosphotransferase) domain 1 97 340 - -
Eupl05g00442 654 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g00442 654 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 605 - -
Eupl05g00442 654 CDD STKc_Nek 15 269 - -
Eupl05g00442 654 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Eupl05g00442 654 FunFam serine/threonine-protein kinase Nek6 isoform X2 95 283 - -
Eupl05g00442 654 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Eupl05g00442 654 MobiDBLite consensus disorder prediction 354 392 - -
Eupl05g00442 654 MobiDBLite consensus disorder prediction 377 392 - -
Eupl05g00442 654 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00442 Eupl-Chr5 18660906 18672233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00442 6 270 MAP Kinase Kinase Kinase AT1G53570 30.000 7.62e-37 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Eupl05g00442 Pkinase 3.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00442 K08857 - nnu:104597445 771.541