Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00435 ATGCAAAATACCCTGGAAGATCTCCTAATTTTGAAAAATTTGGGTTTGGAAACTAAACCAAGGAAAGTGCCAAGGATTCTAGAATGCCGTTGGAGGGATCCTTGTTGTGGGGTGATTAAGATCAATTGTGATGGAGCAGCGAAAGGCAACCCAGGGATCGGTGGTCTTGGAGCGGTGTTCAGAGACTCGAAAAGTCAGGTGGTTGGGGCAATGGCTAAGAACCTTGGGATTGTCACGAATTTCATAGCGGAATGTATGGCAATAGCTCATGGCATGCAACGGGCCACTGAGGAAGGATGGAGACGTCTATGGATAGAATCGGATTCCAAAGTGGCTATTAGAGCTTTCAAACAAGAGTGGAATTTGATCAACTCTCATGGCGGTGACGAAGTCCCAAAGGTGGCAGATTTTCTGGGTGTCGGAAAATCTGAGAACCAATTGGAACTTTCGACGTTCAACCAAATTCAGGCGACCCCTTCCGACTATCTCTTCTCAAACTGCAATCTTCAGCCCATGGAAAACTCTGCTGCTGCTGACACCACCAAAGACTATGATTCTCAAGGAAATGTAAACAATTTGCAGTCATTGACACTGTCAATGGGCAGTGGTAAGGGTTTGACTACTGAGAGCAGTGCTGGGAGTAATGCAGTTGAAGTGACACCAAGAAGGTCACTCGATTCATTTGGGCAAAGAACTTCCATATATCGAGGTGTAACAAAGCATAGATGGACTGGAAGATATGAAGCCCATCTGTGGGATAATAGTTGCAGAAGGGAGGGACAGTCGAGGAAAGGTCGCCAAGGTGGGTATGACAAGGAAGATAAGGCAGCTAAGGCTTATGATTTGGCTGCTCTTAAGTACTGGGGCACCTCCACCACAACAAATTTCCCTATAAGCAATTATGAGAGGGAATTGGAGGAGATGAAGCAAATGACTAGGCAAGAATTTGTGGCATCTCTTAGAAGGAAAAGTAGTGGCTTTTCTAGGGGTACTGAAGAGGAAGCAGCGGAGGCATACGATATTGCTGCTATAAAGTTCAGAGGCCTGAATGCAGTGACTAACTTCGACATGAATCGATATGATGTAAAAAGCATTCTTGAAAGCAACACACTGCCCATAGGTGGAGGAGCTGCCAAGCGCTTAAAGGAGTCGCAAGTGATCCAGCCTTCAAGGCAGAGAGAGGAGATGAAAGCTCTTGGTTCGAGCTTCTATGATGGCAGTTCAAGTAGCTTCCCGGGCTACAGTTTAGTACCATTTGAGCAACCTCAGCCCTTGTTAGCCCTACAAAGCCAGCACAATACCAATTATATCCAAGAGCCACAATTTCCTCAAAATTACATACAAAACCACCACCAGTTGCACCAACAGAACACTTCTTTACTTCAGCCAAACCAAGACTCTCAGTTTCATCACAGTTACCTTCAAAACCACCCTGTATTGCTTAATGGGTTGATGAGTATGGGATCACCATTGTCCATGATGGAAAGCAATGGGAGCTCTAGTAATGGCTACAATGATGGATTTTTGGGTAGTGGGATTGGAATGGCAGCAAATTCGTCGGCCATGCATGCAGGAGGATTAGGATCGACAACAGATATTGGGATTAAGGTTGATTATGACATGAATTCGGGGGGTTATGTTGGCTGGCCAGTGGACTCGGTTCAAGGATCAAATCCTGGTGTTTTTACAATGTGGAATGATAGTTGA 1707 0.4528 MQNTLEDLLILKNLGLETKPRKVPRILECRWRDPCCGVIKINCDGAAKGNPGIGGLGAVFRDSKSQVVGAMAKNLGIVTNFIAECMAIAHGMQRATEEGWRRLWIESDSKVAIRAFKQEWNLINSHGGDEVPKVADFLGVGKSENQLELSTFNQIQATPSDYLFSNCNLQPMENSAAADTTKDYDSQGNVNNLQSLTLSMGSGKGLTTESSAGSNAVEVTPRRSLDSFGQRTSIYRGVTKHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAAKAYDLAALKYWGTSTTTNFPISNYERELEEMKQMTRQEFVASLRRKSSGFSRGTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKESQVIQPSRQREEMKALGSSFYDGSSSSFPGYSLVPFEQPQPLLALQSQHNTNYIQEPQFPQNYIQNHHQLHQQNTSLLQPNQDSQFHHSYLQNHPVLLNGLMSMGSPLSMMESNGSSSNGYNDGFLGSGIGMAANSSAMHAGGLGSTTDIGIKVDYDMNSGGYVGWPVDSVQGSNPGVFTMWNDS* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00435 568 Pfam Reverse transcriptase-like 42 126 IPR002156 GO:0003676|GO:0004523
Eupl05g00435 568 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 331 448 - -
Eupl05g00435 568 CDD AP2 233 299 IPR001471 GO:0003700|GO:0006355
Eupl05g00435 568 Gene3D AP2/ERF domain 234 299 IPR036955 GO:0003700|GO:0006355
Eupl05g00435 568 Gene3D AP2/ERF domain 309 358 IPR036955 GO:0003700|GO:0006355
Eupl05g00435 568 SMART rav1_2 234 303 IPR001471 GO:0003700|GO:0006355
Eupl05g00435 568 SMART rav1_2 308 362 IPR001471 GO:0003700|GO:0006355
Eupl05g00435 568 ProSiteProfiles AP2/ERF domain profile. 286 356 IPR001471 GO:0003700|GO:0006355
Eupl05g00435 568 Pfam AP2 domain 234 289 IPR001471 GO:0003700|GO:0006355
Eupl05g00435 568 FunFam AP2-like ethylene-responsive transcription factor ANT 233 299 - -
Eupl05g00435 568 SUPERFAMILY Ribonuclease H-like 38 138 IPR012337 -
Eupl05g00435 568 SUPERFAMILY DNA-binding domain 330 357 IPR016177 GO:0003677
Eupl05g00435 568 ProSiteProfiles AP2/ERF domain profile. 234 297 IPR001471 GO:0003700|GO:0006355
Eupl05g00435 568 Gene3D - 37 156 IPR036397 GO:0003676
Eupl05g00435 568 PRINTS Ethylene responsive element binding protein signature 338 358 IPR001471 GO:0003700|GO:0006355
Eupl05g00435 568 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700|GO:0006355
Eupl05g00435 568 CDD RNase_H_like 41 127 IPR044730 -
Eupl05g00435 568 SUPERFAMILY DNA-binding domain 233 299 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00435 Eupl-Chr5 18338333 18356844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00435 118 567 AP2-EREBP Transcription Factor Family AT1G51190 50.829 2.13e-145 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl05g00435 RVT_3 1.6e-17 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00435 K09285 - pvy:116115844 553.518