Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00424 ATGGCACCGACGGAGAGGAAGCCGAGAGTTTGCAGAAACCCTGATCTGATCCGTGGTGTGGGTAAGTACTCAAGATCAAAGATGTACCACAAAAGAGGTCTCTGGGCCATCAAGGCCAAGAACGGCGGCGTCTTCCCACGCCACGATTCCAAGCCGGCGGAACCAAAATCCGCCGAAAAGCCCCCGAAATTCTACCCTGCGGATGACGTGAAGAAGCCATTGATCAACAAACGCAAACACAAGCCCACCAAGCTCAGGGCAAGCGTAACTCCTGGAACGGTTCTAATTATCCTGGCTGGGAGGTTTAAGGGCAAAAGAGTTGTTTTTCTGAAACAACTCACATCTGGGTTGCTTCTTATTACTGGGCCATTCAAGATTAATGGTGTTCCTTTACGGCGTGTGAACCAGTCATATGTCATTGCAACCTCCACTAAGGTTGACATTTCCGGGGTAAATGTCGAAAAGTTTGATGACAAGTATTTTGCGAAGGAGAGCATAAAGAAGAAGAAGAAAGGAGAGGGCGAGTTTTTTGAAGCAGATAAAGAGGAAAAGAATGTGCTCCCACCAGAGAAGAAAGATGATCAGAAAGCCGTGGATGCCCAGTTGATAAAATCCATTGATGGTGTTCCGGACTTGAAGACATACTTGGCTGCTAGATTTTCTCTTAGGTCAGGCATGAAACCTCATGAACTTGTCTTCTAG 702 0.4701 MAPTERKPRVCRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDSKPAEPKSAEKPPKFYPADDVKKPLINKRKHKPTKLRASVTPGTVLIILAGRFKGKRVVFLKQLTSGLLLITGPFKINGVPLRRVNQSYVIATSTKVDISGVNVEKFDDKYFAKESIKKKKKGEGEFFEADKEEKNVLPPEKKDDQKAVDAQLIKSIDGVPDLKTYLAARFSLRSGMKPHELVF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00424 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Eupl05g00424 233 CDD KOW_RPL6 81 233 IPR041997 -
Eupl05g00424 233 ProSitePatterns Ribosomal protein L6e signature. 127 145 IPR000915 GO:0003735|GO:0005840|GO:0006412
Eupl05g00424 233 Gene3D - 87 171 IPR014722 -
Eupl05g00424 233 Pfam Ribosomal protein L6, N-terminal domain 3 60 IPR005568 GO:0003735|GO:0005840|GO:0006412
Eupl05g00424 233 FunFam 60S ribosomal protein L6 87 171 - -
Eupl05g00424 233 SUPERFAMILY Translation proteins SH3-like domain 87 173 IPR008991 -
Eupl05g00424 233 PANTHER 60S RIBOSOMAL PROTEIN L6 6 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00424 Eupl-Chr5 17684359 17689494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00424 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 79.399 2.29e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00424 K02934 - nnu:104597510 401.364