Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00419 ATGAAATATTTCAATTTCAGTAGTTGTTTTTTATCTTCTGGTTTCAATCTAGGATTCTGTTGCGTTGTTGCTTTTCTTGGGAATTTAGAACCCATGGATGCCAATCTTCTTCATCATAATCATCAACAACAGCAGCTGAACTGTGGCCTAATGCGGTACCGCTCTGCTCCAACCTCCCTGCTTACCAATTTCGTTGGTGAGGATGAAGGATGCAACCGTTTCATATCTCCTCCATCTTCAAGCTCTGAAGCAGAGAGCATGTTTGCAAGGTTCATGTCTTGTGGTGGTGGTGGTGATTCGGGTTCTCCTGATCTCGGTGTCGGCGAGATCAGAGATAAATCTTTTGCCACAGCACCAACTGCAACTAATAGTAGAAGCCCTGAGTTTATTGGGAAGATGGAACAAGAACCGGAGGTCGTTCAGCAGCATAATGGATATCCTCCAGCTTCTCAGATGACTTACAAAACTGCACCACCACCTACCCAGAGTCACAGCTCCTCCACCACTGCCACCACAATGGAGAGCTCTTTTAGTCATCCTCCACAGATGAGGATGAGTACTGGAAATTGTTCCAATCTTATCAGGCATAGCAGCTCTCCGGCTGGGATTCTATCCCAATTAACCGTCAAAACGGGCTATGCTGTAACGAGGGGCACGGGCAATTTCAGAGCCGGAAATGGTATTAATGGAGAAGCAGCTGTGTCAACTAGCAGGTTGAAGGGTCAAATGAACTTCTTGTCCGGGCCACCTTCCCCATTGGGGCTAATGTCTCAGATGAATGAAATCGAGAGTGAAAACATTGGAACGAGCAGCACCGATAACCGAAGCTTCAGAAAGGGTAATGGTGGCAATGGTTACATCCCTGGATTTCCGATTGGTTCTTGGGACGATTCCACACTTGAAAATTTTACATGCCTTAAAAGAGTCAGAGATACCAGTGGAAAGATGATTTCTGGCTTACATCCATCCGAGACTCAGACTGGAGAGGCTGGAAACCATACACCTGGTCTAACCCATCATCTTAGTTTGCCAAAGACTTCTGCGGAGATGAATGCCATGGAAAAGTTTCTGCAATGCCAGGATTCTGTTCCTTGTAAGATTCGAGCCAAACGGGGTTGTGCGACACATCCACGAAGCATCGCAGAAAGGGTGAGAAGAACCCGGATTAGCGAAAGAATGAGAAAATTACAAGAGTTTGTACCAAACATGGACAAGCAAACAAACACAGCAGACATGTTAGATTTAGCTGTGGATTACATTAAAGACCTCCAGAAACAGGTCAAGACGCTCTCCGATAATCAGGTGAACTGTACGTGTTCAAGCTAG 1326 0.457 MKYFNFSSCFLSSGFNLGFCCVVAFLGNLEPMDANLLHHNHQQQQLNCGLMRYRSAPTSLLTNFVGEDEGCNRFISPPSSSSEAESMFARFMSCGGGGDSGSPDLGVGEIRDKSFATAPTATNSRSPEFIGKMEQEPEVVQQHNGYPPASQMTYKTAPPPTQSHSSSTTATTMESSFSHPPQMRMSTGNCSNLIRHSSSPAGILSQLTVKTGYAVTRGTGNFRAGNGINGEAAVSTSRLKGQMNFLSGPPSPLGLMSQMNEIESENIGTSSTDNRSFRKGNGGNGYIPGFPIGSWDDSTLENFTCLKRVRDTSGKMISGLHPSETQTGEAGNHTPGLTHHLSLPKTSAEMNAMEKFLQCQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQEFVPNMDKQTNTADMLDLAVDYIKDLQKQVKTLSDNQVNCTCSS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00419 441 SMART finulus 379 429 IPR011598 GO:0046983
Eupl05g00419 441 FunFam Transcription factor bHLH130 family 374 441 - -
Eupl05g00419 441 Pfam Helix-loop-helix DNA-binding domain 378 424 IPR011598 GO:0046983
Eupl05g00419 441 Gene3D - 374 438 IPR036638 GO:0046983
Eupl05g00419 441 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 423 IPR011598 GO:0046983
Eupl05g00419 441 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 376 432 IPR036638 GO:0046983
Eupl05g00419 441 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 64 435 - -
Eupl05g00419 441 MobiDBLite consensus disorder prediction 154 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00419 Eupl-Chr5 17503895 17507880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00419 32 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 39.173 1.67e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl05g00419 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00419 - - ming:122075215 460.299