Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00409 ATGGAGATGGGTTCGAGCTCTTTGGCTCTTTCATCAGGGGGTGCTTCTGGTTCGTCTGATTCTTCACTCAACGGTTTGAAATTTGGTAAGAAAATCTACTTTGAAGATGTGGTTATGGGAGCTTCGGCCAAATCAAGTGGTGGGTCGTCGTCTGTTTCTGTTCCTGAGGGGGGTTCCACTTCGGCGCTGACGCCGACGCCGACGAGGAAGGGGAGGGGGGTCGTGCAGGGAGGGCAACCTCCCAGGTGTCAGGTTGAGGGGTGTAAGTTGGATCTGAGTGGTGCCAAGGCTTATTACTCGAGGCACAAGGTCTGTGGCATGCATTCCAAGTCTCCTAAGGTCGTTGTTGCTGGTCTTGAGCAGAGGTTTTGCCAGCAGTGTAGCAGATTTCATCAGCTCTCCGAATTTGACCAAGGAAAACGCAGTTGTCGTAGACGTCTAGCTGGCCACAATGAGCGTCGGAGGAAGCCACAAGCTGGATCATTATTAACTTCACGCTATGGGCGACTGTCCTCATCTCTCCAAGAAAACAGCAGCAGAGTTGGAGGCTTTCTGATGGACTTCACGACGTACCCAAGACTGCCGGGGAGGGATGTGTGGCCGACCATAAGAGCTGGCAATTGGGCATCTGACAACCAACCCTCTGCTACTGGAAAGTTTGTTCCACATTTATGGCAGGGCAGTCAAGAGAATCCTCTTCCTACTGCCTTCCCTCATGCATCCCACGCATATCTGCAAGCTTCAGCAGGTGGGACGGTCTTTTCCAGTTCCGGAATTCCTCCGGATGAATGTTTTGCAGGAGTCTCCGACTCCGGCTGTGCTCTCTCTCTTCTGTCAACTCAGCCATGGGGCCCCAGAAACCAAGCGTCAGGTCTTGCACTGAATAACTTAACGAACAACGAAGGGGCCCCAATGGCTCAATCAACAGCAGCTCATAGTGCTGTGGTGAATAACCTCACAAACAACACGTGGAGTTTCAAGGGCAATGAAACTAGTAGCAGCTCACACGAAATGCCACATCATTGGGGCCTTGGACAAGTTTCCCAACCTGTCAACAGTCAGTTCTCTGGTGAGCTCGAGTTAGCTCAGCAAGGGGGCAGGCATTACATGGGACTTGGGCACTCAAGAAATTATGGCTCTTCTACGCATCAGATGCACTGGTCCCTTTGA 1170 0.5188 MEMGSSSLALSSGGASGSSDSSLNGLKFGKKIYFEDVVMGASAKSSGGSSSVSVPEGGSTSALTPTPTRKGRGVVQGGQPPRCQVEGCKLDLSGAKAYYSRHKVCGMHSKSPKVVVAGLEQRFCQQCSRFHQLSEFDQGKRSCRRRLAGHNERRRKPQAGSLLTSRYGRLSSSLQENSSRVGGFLMDFTTYPRLPGRDVWPTIRAGNWASDNQPSATGKFVPHLWQGSQENPLPTAFPHASHAYLQASAGGTVFSSSGIPPDECFAGVSDSGCALSLLSTQPWGPRNQASGLALNNLTNNEGAPMAQSTAAHSAVVNNLTNNTWSFKGNETSSSSHEMPHHWGLGQVSQPVNSQFSGELELAQQGGRHYMGLGHSRNYGSSTHQMHWSL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00409 389 SUPERFAMILY SBT domain 81 161 IPR036893 GO:0003677|GO:0005634
Eupl05g00409 389 FunFam Squamosa promoter-binding-like protein 14 74 144 - -
Eupl05g00409 389 Pfam SBP domain 83 156 IPR004333 GO:0003677
Eupl05g00409 389 MobiDBLite consensus disorder prediction 42 79 - -
Eupl05g00409 389 MobiDBLite consensus disorder prediction 147 167 - -
Eupl05g00409 389 MobiDBLite consensus disorder prediction 1 23 - -
Eupl05g00409 389 ProSiteProfiles Zinc finger SBP-type profile. 80 157 IPR004333 GO:0003677
Eupl05g00409 389 MobiDBLite consensus disorder prediction 43 67 - -
Eupl05g00409 389 Gene3D - 73 144 IPR036893 GO:0003677|GO:0005634
Eupl05g00409 389 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 366 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00409 Eupl-Chr5 16671566 16699757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00409 26 389 SBP-box Gene Family AT2G42200 41.919 8.39e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Eupl05g00409 SBP 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00409 - - nnu:104597533 572.007