Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00406 ATGGAGTTTGTTACGATCAATGAGGTCACTGTCGAAGATCTCAAATCGGATGATGGGATCACAACCCAAGAAATGAAGGAACAAGATCTGATTCGTCGACTGGAGCAATTTCCTAGTGAGAATCCCGATTGTGGAGTCGACTGCACACTCAAGCTAGGGTTCTCTTATGATCAACTCAAATCAGAACCTAGGAACGATCAGAAGCCCAGAAAAGCAGTATCTACTATGAACGTCTATGGTGCTTCTTCGCAGGTAATGGAGAAGAATGGGATGGTGAATGGAAGAGGGGATGCATATACTAGATGGGCCATCAACGGCCCACCCAAACCTAATTGGTTACCAGATATGATCAACCATAACAACAACATGGCTGGTTTTGGTTTCTATGGACCTCCTACAATCACAGCCCCTGCTGCTTCCAACATCCGCACCAACTACGGCCGATATGCAGGTTTCTCCAAGCCAGGGAGCGACATCTTTCATTTGAGGACTGAACCAGAGCCCAATGACCCAGCAAGAAGGTGCTTGGCATGTCAGACAACAACCACACCATTATGGCGCAACGGCCCCATGGGCGCCAAGTCTCTGTGCAATGCTTGTGGGATTCGGTACAAGAAGGAAGAGAGAAGGATGATGGGGATTACAGAGTCTCATTCAAAACCGAAGGTTGGTGCAGCCAAGGGGAGAGAGTCTTCCAAGAAACCAAAGTTCTAA 714 0.4776 MEFVTINEVTVEDLKSDDGITTQEMKEQDLIRRLEQFPSENPDCGVDCTLKLGFSYDQLKSEPRNDQKPRKAVSTMNVYGASSQVMEKNGMVNGRGDAYTRWAINGPPKPNWLPDMINHNNNMAGFGFYGPPTITAPAASNIRTNYGRYAGFSKPGSDIFHLRTEPEPNDPARRCLACQTTTTPLWRNGPMGAKSLCNACGIRYKKEERRMMGITESHSKPKVGAAKGRESSKKPKF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00406 237 SMART GATA_3 169 222 IPR000679 GO:0006355|GO:0043565
Eupl05g00406 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 169 209 - -
Eupl05g00406 237 ProSiteProfiles GATA-type zinc finger domain profile. 169 205 IPR000679 GO:0006355|GO:0043565
Eupl05g00406 237 Pfam GATA zinc finger 175 209 IPR000679 GO:0006355|GO:0043565
Eupl05g00406 237 MobiDBLite consensus disorder prediction 212 237 - -
Eupl05g00406 237 PANTHER GATA TRANSCRIPTION FACTOR 18 23 230 IPR044272 GO:0003700|GO:0009908
Eupl05g00406 237 Gene3D - 167 235 IPR013088 GO:0006355|GO:0008270
Eupl05g00406 237 CDD ZnF_GATA 174 229 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00406 Eupl-Chr5 16390178 16401891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00406 173 210 C2C2-Gata Transcription Factor Family AT2G18380 81.579 4.27e-17 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl05g00406 GATA 2.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00406 - - msin:131219540 188.348