Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00405 ATGAATTTCGGACCTGCTCGCAAGAGGGGGAGGCCGGACGCCGCCTTAAATGGAAATGGAGGAGTTAAGCGAAACAAGCAAGAAATGGAGTCCTTTCCAACTGGTATAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACTGCTGGGTGCCCGTTTGGTGAGGGATGCCACTTCCTGCATTATGTTCCTGGTGGCATCAATGCGGTCGCTCAGATGACCAACATGGGAAGCAACCCAGCTCTTCCCCCATCCTCAAGAAACCAGGTGGTTCCACCACCCATGCACGATGGTTCATCTTCGCCTGCCATTAAAACCCGCATGTGCAACAAATTCAACTCTGCAGAAGGATGCAAGTTTGGGGACAAATGCAATTTTGCCCATGGTGAGAGGGAACTTGGTAAGCCCATTGCTCCTTCACATGAAGACCCCCGGGCTATGGGCCCTATGGTAGGCAGGTTGGCGAACCGGCTCGAGCCGCCCCCACCTGGCATTGCTGCGGCAGCGAGTTTTGGTGCCTCAGCGACTGCTAAGATAAGCGTAGATGCCTCCCTTGCTGGAGCAATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGTCTCACGGGTGCTAAGCTTGCCATACGAGAGCACGAATCAGATCTGAACCTGAGGAACATTGAGCTTGAAGGGACCTTTGAACAGATTAAACAAGCCAGTGCAATGGTCCGTGAGCTAATTGTGAATGTTGGTTCAAACGCAGGCCATACGAAGAACCATGCCGCACCAGCCCCTGCTGCTCCAGCAAGCAATTACAAGACGAAGATGTGTGAGAACTTTGCAAAGGGGTCGTGCACGTTCGGGGAAAGGTGCCACTTTGCACATGGTGCAAATGATCTGCGCAAGTCAGGAATGTGA 906 0.5243 MNFGPARKRGRPDAALNGNGGVKRNKQEMESFPTGIGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGINAVAQMTNMGSNPALPPSSRNQVVPPPMHDGSSSPAIKTRMCNKFNSAEGCKFGDKCNFAHGERELGKPIAPSHEDPRAMGPMVGRLANRLEPPPPGIAAAASFGASATAKISVDASLAGAIIGKGGVNSKQICRLTGAKLAIREHESDLNLRNIELEGTFEQIKQASAMVRELIVNVGSNAGHTKNHAAPAPAAPASNYKTKMCENFAKGSCTFGERCHFAHGANDLRKSGM* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00405 301 Pfam RNA-binding, Nab2-type zinc finger 42 62 - -
Eupl05g00405 301 Gene3D - 98 136 - -
Eupl05g00405 301 Gene3D - 265 299 - -
Eupl05g00405 301 CDD KH-I_AtC3H36_like 179 243 - -
Eupl05g00405 301 SUPERFAMILY CCCH zinc finger 104 135 IPR036855 GO:0046872
Eupl05g00405 301 Pfam KH domain 177 241 IPR004088 GO:0003723
Eupl05g00405 301 ProSiteProfiles Zinc finger C3H1-type profile. 104 132 IPR000571 GO:0046872
Eupl05g00405 301 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 169 245 IPR036612 GO:0003723
Eupl05g00405 301 SMART c3hfinal6 37 64 IPR000571 GO:0046872
Eupl05g00405 301 SMART c3hfinal6 104 131 IPR000571 GO:0046872
Eupl05g00405 301 SMART c3hfinal6 267 293 IPR000571 GO:0046872
Eupl05g00405 301 MobiDBLite consensus disorder prediction 1 26 - -
Eupl05g00405 301 ProSiteProfiles Zinc finger C3H1-type profile. 267 294 IPR000571 GO:0046872
Eupl05g00405 301 FunFam Zinc finger CCCH domain-containing protein 99 136 - -
Eupl05g00405 301 PANTHER CCCH ZINC FINGER/TIS11-RELATED 11 142 IPR045877 GO:0003729
Eupl05g00405 301 ProSiteProfiles Type-1 KH domain profile. 175 239 - -
Eupl05g00405 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 106 131 IPR000571 GO:0046872
Eupl05g00405 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 292 IPR000571 GO:0046872
Eupl05g00405 301 SMART kh_6 174 244 IPR004087 GO:0003676
Eupl05g00405 301 FunFam Zinc finger CCCH domain-containing protein 262 298 - -
Eupl05g00405 301 ProSiteProfiles Zinc finger C3H1-type profile. 37 65 IPR000571 GO:0046872
Eupl05g00405 301 MobiDBLite consensus disorder prediction 82 102 - -
Eupl05g00405 301 Gene3D K Homology domain, type 1 171 264 IPR036612 GO:0003723
Eupl05g00405 301 SUPERFAMILY CCCH zinc finger 265 297 IPR036855 GO:0046872
Eupl05g00405 301 SUPERFAMILY CCCH zinc finger 38 63 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00405 Eupl-Chr5 16372846 16389547 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl05g00405 KH_1 1.5e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00405 - - ming:122089292 492.656