Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00392 ATGTCGTCAACTAACAACACCACCGCCGCCGCGATGAACAGCAGCAGCAGTAGCAGCAACGGCAGACAAACATATTGGTGTCACGAGTGCGACATGAGCGTCTCTCTCTTCTTCTCCTCTCCTCCTCTCCTCTGCCCTCATTGTCAAGGCGACTTCCTCGAAGAAATGGAATCCTCTCTCTCCAATCCTAACCCTAACCCTAACCCTAACCCTAACCCTAATCCTAATTCTACTCCCAATCACTCCCTTTTCCATCCTCCCCTCGACCTCTCCCCTCCTCAAACCCTAACCCCCACCACCGACGAAGACGATCTCGACGCCTTCCGTGTCTCTGACGCCTACCTCCTCGACCGTCTGATCCAACATCTTGCTGATCCCGAGGACGATACTGGTGGCTACCACCAGCAACATGGTTCGTCCCCTGCCTCCAAGTCTTCTGTTGAATCCATTCCCACCATCAAAATTACTAGCTCTTTCTTGGCTTCCGATACAATTCTTTGTGCTGTCTGTAAGGATGAGTTTGTGATCGATGTGGAAGCCAAACAGTTGCCTTGTAACCACATTTACCATTTCGATTGTATTCTTCCGTGGCTTTCGCAGCACAATTCGTGCCCAGTCTGTAGATTTCGTCTCCCCACTGATAAATCTGAGCGGAGATTGACTCATACTGGACCAAGGGTTGCCGTTAGGTTTGGGAATTTGATGGAGGAGGAAGAGGACGATTTATTTGGGATGGGGAGTACGTTGAGGCATATTGCTAGGAGACACAGGCTTGTTTTTCCTTTGCGATCGAATGCTATAGCTGTAGATTCTTCTTCATCCCCGACTCAGATGGCACAAGCTGAGACAAGTTCAGCAGGACCTGCTAATAGTGGCGAGACTGTGTCAAGTTTCCCGGTCGAAGGAGGGAATCATATGGGTGGTGGTGGGGGTGGCAATGGCAGGGTAGATGAGGATGGTGATACTGTAATGTCTGAAGTTAGGGGAGGTTTGTTGGATTGA 1002 0.501 MSSTNNTTAAAMNSSSSSSNGRQTYWCHECDMSVSLFFSSPPLLCPHCQGDFLEEMESSLSNPNPNPNPNPNPNPNSTPNHSLFHPPLDLSPPQTLTPTTDEDDLDAFRVSDAYLLDRLIQHLADPEDDTGGYHQQHGSSPASKSSVESIPTIKITSSFLASDTILCAVCKDEFVIDVEAKQLPCNHIYHFDCILPWLSQHNSCPVCRFRLPTDKSERRLTHTGPRVAVRFGNLMEEEEDDLFGMGSTLRHIARRHRLVFPLRSNAIAVDSSSSPTQMAQAETSSAGPANSGETVSSFPVEGGNHMGGGGGGNGRVDEDGDTVMSEVRGGLLD* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00392 333 MobiDBLite consensus disorder prediction 270 333 - -
Eupl05g00392 333 SUPERFAMILY RING/U-box 148 215 - -
Eupl05g00392 333 MobiDBLite consensus disorder prediction 56 103 - -
Eupl05g00392 333 MobiDBLite consensus disorder prediction 133 147 - -
Eupl05g00392 333 CDD RING-H2_RNF126-like 167 208 - -
Eupl05g00392 333 Pfam zinc-ribbon 23 56 IPR039525 GO:0061630
Eupl05g00392 333 MobiDBLite consensus disorder prediction 1 21 - -
Eupl05g00392 333 MobiDBLite consensus disorder prediction 125 147 - -
Eupl05g00392 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 214 IPR013083 -
Eupl05g00392 333 ProSiteProfiles Zinc finger RING-type profile. 167 208 IPR001841 -
Eupl05g00392 333 SMART ring_2 167 207 IPR001841 -
Eupl05g00392 333 FunFam E3 ubiquitin-protein ligase RING1-like 129 214 - -
Eupl05g00392 333 Pfam Ring finger domain 167 208 IPR001841 -
Eupl05g00392 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 212 - -
Eupl05g00392 333 MobiDBLite consensus disorder prediction 270 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00392 Eupl-Chr5 15836829 15838946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00392 22 245 C3H Transcription Factor Family AT3G60080 37.295 2.96e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00392 K11982 - psom:113310735 415.616