Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00383 ATGAACACTCAGAAGATTGAGTGCCTAGAACAGAACCGTGGAGCATTAAATGATTATTCTTTTGAATTACCCGATTGTTCTTCAGAGAACTTTTGTTCTGCGCAGCCTTGGAACATGGGAATTTGTTTCAAGGCTCCATCACTAGCCCTGGAAGAAGGCTTGCAGTTGCCAAACATCAGGCCCACTAATTCGTCCAGCACTATTGCGAGTCGTTTCAGATCACCAGCTTCTGTGTTTTACGCAACTGAACACTACATGGGTTTTCCACTGTACGAGTCTCAACTCGGGACCGTCCCTTTGTTCTCCCAATTTCCCAAAAATTATGATCTAGATATCTCTTCATATCGACCTTCTGAGGACTATTTCTCAGTTGATTCAGCAAAGCAAGAGGATCTCTATCTTCACTCACAAGATACCTTGCAATCCGTTGTGAAACTTCCCTCATGTAGCACTCAAAATTCTAGACCTGAAAACTCCTATCAGATTTCATGTAAAAATCTGCCGAGGAGTGAGCTCTTTCCGCTTTTGCAGAATAAGTCGGTGTGTGAGGATGCCACCTTAAATAGGAGGCAACCATTAATTTCTTTTGAGGGATATCAGAATCCTAGAGTTCGCTGTAATACATTTAACTCTTCACTTGCACAACCTAACTTACATCTTCAGTCAGAGAATCAATCTCCAAAGCCTTCTTCTGGGATTGTTTCTGTTACTACTGGTAGCCCCGTTTCATCTGTAGCGGCCGTTTCGAGTAAAACACGGATCCGATGGACTCAAGAACTTCACGAGCAATTTGTTGAATGTGTGAATCGTCTTGGTGGTGCTGAGAAGGCAACTCCAAAGGGAATCCTGAAGCTGATGGACTCAGATGGATTGACCATCTTCCACGTGAAAAGCCATTTGCAGAAATATCGAACTGCCAAGTACATACCAGAATCTGCAGAAGGGAAATCGGAGAGGAGAACTTGTATGAATGATGTAACACAGCTCGACCCAAAAACCGGCCTGCAAATAAAGGAGGCACTGCAACTGCAACTAGACGTCCAGAGGCGTCTTCATGAGCAGTTAGAGATTCAGCAAAGGCTACAAATGCGGATCGAAGAACAAGGGAGGCAACTGAAGAAAATGTTTGACCGGCAACAAAAATCAAACAAGAGCCTATTTGAGACACAAAACTTGGATGTCATGTTTCCAGATGACCAGACTACTAGTCTTGAAGATGTTCAGGTTTCTAGCATAGGAGAAGGATCAGAAAATACCCATTTCCCATCCAAGATATGTTAG 1281 0.4333 MNTQKIECLEQNRGALNDYSFELPDCSSENFCSAQPWNMGICFKAPSLALEEGLQLPNIRPTNSSSTIASRFRSPASVFYATEHYMGFPLYESQLGTVPLFSQFPKNYDLDISSYRPSEDYFSVDSAKQEDLYLHSQDTLQSVVKLPSCSTQNSRPENSYQISCKNLPRSELFPLLQNKSVCEDATLNRRQPLISFEGYQNPRVRCNTFNSSLAQPNLHLQSENQSPKPSSGIVSVTTGSPVSSVAAVSSKTRIRWTQELHEQFVECVNRLGGAEKATPKGILKLMDSDGLTIFHVKSHLQKYRTAKYIPESAEGKSERRTCMNDVTQLDPKTGLQIKEALQLQLDVQRRLHEQLEIQQRLQMRIEEQGRQLKKMFDRQQKSNKSLFETQNLDVMFPDDQTTSLEDVQVSSIGEGSENTHFPSKIC* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00383 426 Coils Coil 338 358 - -
Eupl05g00383 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 250 308 IPR017930 -
Eupl05g00383 426 FunFam Myb family transcription factor 250 308 - -
Eupl05g00383 426 Gene3D - 250 309 - -
Eupl05g00383 426 SUPERFAMILY Homeodomain-like 249 305 IPR009057 -
Eupl05g00383 426 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 225 411 IPR044848 GO:0003700
Eupl05g00383 426 NCBIfam myb-like DNA-binding domain, SHAQKYF class 251 306 IPR006447 GO:0003677
Eupl05g00383 426 Pfam Myb-like DNA-binding domain 255 304 IPR001005 -
Eupl05g00383 426 Pfam MYB-CC type transfactor, LHEQLE motif 335 382 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00383 Eupl-Chr5 15285314 15291499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00383 241 379 G2-like Transcription Factor Family AT4G28610 60.000 1.30e-51 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Eupl05g00383 Myb_DNA-binding 2.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00383 - - nnu:104603510 471.085