Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00382 ATGGAGGATTCAAAAAAGAGGAAGCTTGACGAAACGGGAAACGGGCAACTTAAGTCCCTACCATCGGAAGAACATCTACGGATGCTTCTTGACCCCCTCAGAAAAGACCAACTGCTCGATCTCCTCGCCAAGCTAGGGTCCCAATATCCTTCAGTTGCAGAAGAAATTAAAAGTGTTGCAAGTGCAGATCCAGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCTTGGGATACTACTTCAGAAACCTTGTGTGCTGCATTTCGGGTGCATGGAGAAATCGAGGAAGGAGCTGTCATTGTTGACAAAGCCACAGGAAAATCACGTGGATATGGGTTCATTACATATAAACATATGGAGTCAACTCAGAGTGCATTGAGGGAACCTAGCAAATTGATTGATGGTCGCATGGCTGTCTGTAACCTAGCTTGTGAGGGCCTAAGCAGCACGAGCATAACCCCTGATCAAGCCCAAAGGAAGCTCTACATTGGAGGTTTATCGCCAGAAATAACAAGTGAGACGCTGCTCAGTTTTTTTGGCAGGTACGGTGAAATAGAAGAAGGTTCAGTTGCTTACGACAAAGATACGAATAAATCACGTGGTTTTGGCTTTGTTACATACAAGACGGTGGAGGCTGCAAGAAAGGCTATAGATGATCCAAACAAGATCCTTGGGGGGAGGAACATTACTGTGAAGCTCGCAGACACCCAGAAGGGAAAACTAATACAAACACAGCTACCAGCAGCAATGGTTCCGATAGCCATACCCTTACCAGCTGGATATGTGCAGCCCACAAAGGCACATGTTGTGAGCACTCCCGTCAGCTACTCTGCTTACCCTCAAGCTGTAGCAACATACCCAAGCACTGCCTTCCCAAGTCCGGTTGCTGCTGCTGCTGGTCCATACGCACCACAACCTCAAATATCTTATGCACAGGTCGCTGTAAAGAAAGAGCCAGTTGGACTCCCCGCAGCAGCACCCACTGGAGTCAGTGGGTATCCATACTACATTGCCAAACAATGA 1020 0.4755 MEDSKKRKLDETGNGQLKSLPSEEHLRMLLDPLRKDQLLDLLAKLGSQYPSVAEEIKSVASADPVHRKLFVRGLAWDTTSETLCAAFRVHGEIEEGAVIVDKATGKSRGYGFITYKHMESTQSALREPSKLIDGRMAVCNLACEGLSSTSITPDQAQRKLYIGGLSPEITSETLLSFFGRYGEIEEGSVAYDKDTNKSRGFGFVTYKTVEAARKAIDDPNKILGGRNITVKLADTQKGKLIQTQLPAAMVPIAIPLPAGYVQPTKAHVVSTPVSYSAYPQAVATYPSTAFPSPVAAAAGPYAPQPQISYAQVAVKKEPVGLPAAAPTGVSGYPYYIAKQ* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00382 339 SMART rrm1_1 159 231 IPR000504 GO:0003723
Eupl05g00382 339 SMART rrm1_1 68 140 IPR000504 GO:0003723
Eupl05g00382 339 SUPERFAMILY RNA-binding domain, RBD 156 238 IPR035979 GO:0003676
Eupl05g00382 339 MobiDBLite consensus disorder prediction 1 20 - -
Eupl05g00382 339 Gene3D - 147 242 IPR012677 -
Eupl05g00382 339 PANTHER GEO13361P1-RELATED 154 304 - -
Eupl05g00382 339 Gene3D - 58 146 IPR012677 -
Eupl05g00382 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 158 IPR000504 GO:0003723
Eupl05g00382 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 235 IPR000504 GO:0003723
Eupl05g00382 339 CDD RRM2_NsCP33_like 159 233 - -
Eupl05g00382 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 228 IPR000504 GO:0003723
Eupl05g00382 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 135 IPR000504 GO:0003723
Eupl05g00382 339 SUPERFAMILY RNA-binding domain, RBD 62 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00382 Eupl-Chr5 15216055 15255451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00382 150 256 C2H2 Transcription Factor Family AT2G19380 40.187 2.52e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00382 K12741 - ming:122069605 534.643