Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00374 ATGGCTGCAATCTCTTCTTTGTTGTCTTCAAATCTTCTTCAACAACCCACAAAATCCTTCACAATCCAAGCACAAGCCTCAAAACCTTCACTTCGACTTCCCAAACCAGCTTCTCTTCGAAATTCACATGGATTCACTGTTTTGCCTTTCTTCTTGAACCCTAAAGAAACCCAAATAGTCTATGCTGTTGCTGAAGAAGCCTCTGTATCGACCCAAGACCCGTCGTCTGAGTCGGCGAGGAGATTGTACGTCGGGAACATTCCGAGGACTGTCGACAACTCAGAACTTAAACAGATTTTCGAAGAACACGGAGCCATCGAGAAAGCTGAGGTAATGTATGATAAGTACTCTGGAAGGAGCCGCCGTTTCGCGTTTGTTACTATGAAGACAGTTGAGGATGCAAATGCTGCTGTTGAGAAGCTGAATGGAACAGAAATTGGAGGACGAGAAATCAAAGTAAATATAACGGAGAAACCTTTGCAGACTGCGGATTTGTCCATCCTCCAAGACGAGGAATCCAAATTTATTGACAGCCCTCACAAGGTCTATGTAGGTAATCTTGCAAAGGCAGTGACTTCCGATACACTCAGCAAGTTCTTCTCTGAGAAGGGAAAGGTTGTTAGTGCAAAAATATCACGGGTGCCAGGGACCTCAAAATCCAGTGGATTTGGATTTGTTTCATTCTCTTCAGACGAGGATGTAGAAGCTGCCATTTCATCATTTAACAATACTTTATTGGAAGGGCAACGAATTCGTGTAAACAAAGCTTGA 771 0.4345 MAAISSLLSSNLLQQPTKSFTIQAQASKPSLRLPKPASLRNSHGFTVLPFFLNPKETQIVYAVAEEASVSTQDPSSESARRLYVGNIPRTVDNSELKQIFEEHGAIEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAVEKLNGTEIGGREIKVNITEKPLQTADLSILQDEESKFIDSPHKVYVGNLAKAVTSDTLSKFFSEKGKVVSAKISRVPGTSKSSGFGFVSFSSDEDVEAAISSFNNTLLEGQRIRVNKA* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00374 256 Gene3D - 53 164 IPR012677 -
Eupl05g00374 256 SMART rrm1_1 181 254 IPR000504 GO:0003723
Eupl05g00374 256 SMART rrm1_1 81 154 IPR000504 GO:0003723
Eupl05g00374 256 CDD RRM1_PSRP2_like 81 160 - -
Eupl05g00374 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Eupl05g00374 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 252 IPR000504 GO:0003723
Eupl05g00374 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 152 IPR000504 GO:0003723
Eupl05g00374 256 SUPERFAMILY RNA-binding domain, RBD 68 158 IPR035979 GO:0003676
Eupl05g00374 256 SMART rrm2_1 81 154 IPR003954 GO:0003676
Eupl05g00374 256 SMART rrm2_1 181 254 IPR003954 GO:0003676
Eupl05g00374 256 FunFam 30S ribosomal protein 2, chloroplastic 167 256 - -
Eupl05g00374 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 256 IPR000504 GO:0003723
Eupl05g00374 256 Gene3D - 166 256 IPR012677 -
Eupl05g00374 256 SUPERFAMILY RNA-binding domain, RBD 176 256 IPR035979 GO:0003676
Eupl05g00374 256 PANTHER OS02G0815200 PROTEIN 14 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00374 Eupl-Chr5 14966943 14970612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00374 69 256 Eukaryotic Initiation Factors Gene Family AT1G22760 29.534 2.62e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00374 K13126 - nnu:104597519 345.895