Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00365 ATGGAGCTGGGTTTGAGCTTGGGAGATGCTTCATGGCCATTTGCTTTTGTGGAGAAGACTCGTAAGATAAACAACAAGGGTCTAGGGTTTTCCATGGGTTTAGGAGTTCGTTTTAGTGGAAGAGAAGAAGAGAACGAAGAAGATCACGACGGAGAAAATCAGCCTGTTCAGCTTGATCTTCTTCCTCGCGCTCCTGTCCCTCGTAACCCACCTTTTTCACACCTAGGGTTTCCATGCCCCTCTGAAAACGGGAATTCTGAAGCGGGTTCATCGGGTCAGTTGGGGTTATCGGGTCGAGGGTTTGACGTTAATCGGTTGCCGTCTGCGGAGGAAGTCGATGATGGTGCTGCAGTCTCTTCCCCCAACAGCACTGTTTCATCGTTTCAAATGGATTTCTCCATGTTCAGAGGCGGAGGTGGAAGCAAGATAGATTCAGAAAACGCAGGCGTGAACGATGTTGAGACGGAGAGGGCGTCCTCGAGAGCCAGCGATGAGGAGGAGAACGGCCTGACCAGGAAGAAACTTAGACTCTCTAAAGAACAATCAGCTTTTCTTGAAGAAAGTTTCAAGGAACACAATACCCTCAACCCAAAACAAAAGCTTGCTCTAGCCAAACAGCTTAATCTTCGTCCTCGCCAAGTAGAGGTGTGGTTTCAGAACAGAAGAGCCAGAACGAAGCTGAAGCAAACGGAGGTTGACTGCGAGTATTTAAAGCGGTGCTGCGAAACACTGACGGAAGAGAACAGGAGGTTACAGAAGGAGTTGCAAGAGTTAAGAGCCTTGAAGACGTCTCATCCCTTTTACATGCAACTCCCTGCCACCACTCTCACTATGTGCCCTTCCTGCGAGCGCGTCGCCACCACCAACACACCCACCACCGCCGACAATACCACCACCCCCATCCCCAAAGCCTCCTCCTTTTCCCTCGGCAAAACCAGGTTATATCCATTCTCTCACGCTCACAATCACCGGTAG 975 0.5026 MELGLSLGDASWPFAFVEKTRKINNKGLGFSMGLGVRFSGREEENEEDHDGENQPVQLDLLPRAPVPRNPPFSHLGFPCPSENGNSEAGSSGQLGLSGRGFDVNRLPSAEEVDDGAAVSSPNSTVSSFQMDFSMFRGGGGSKIDSENAGVNDVETERASSRASDEEENGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSHPFYMQLPATTLTMCPSCERVATTNTPTTADNTTTPIPKASSFSLGKTRLYPFSHAHNHR* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00365 324 ProSiteProfiles 'Homeobox' domain profile. 168 228 IPR001356 GO:0003677
Eupl05g00365 324 Coils Coil 234 264 - -
Eupl05g00365 324 CDD bZIP 221 260 - -
Eupl05g00365 324 MobiDBLite consensus disorder prediction 61 102 - -
Eupl05g00365 324 MobiDBLite consensus disorder prediction 157 171 - -
Eupl05g00365 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 29 300 - -
Eupl05g00365 324 SMART halz 228 271 IPR003106 GO:0006355|GO:0043565
Eupl05g00365 324 Gene3D - 176 226 - -
Eupl05g00365 324 MobiDBLite consensus disorder prediction 139 171 - -
Eupl05g00365 324 Pfam HD-ZIP protein N terminus 25 128 IPR006712 GO:0005634
Eupl05g00365 324 SMART HOX_1 170 232 IPR001356 GO:0003677
Eupl05g00365 324 CDD homeodomain 172 229 IPR001356 GO:0003677
Eupl05g00365 324 Pfam Homeobox associated leucine zipper 228 262 IPR003106 GO:0006355|GO:0043565
Eupl05g00365 324 MobiDBLite consensus disorder prediction 79 93 - -
Eupl05g00365 324 SUPERFAMILY Homeodomain-like 166 229 IPR009057 -
Eupl05g00365 324 Pfam Homeodomain 172 226 IPR001356 GO:0003677
Eupl05g00365 324 FunFam Homeobox-leucine zipper protein HAT22 176 222 - -
Eupl05g00365 324 ProSitePatterns 'Homeobox' domain signature. 203 226 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00365 Eupl-Chr5 13347308 13348873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00365 99 321 Homeobox Transcription Factor Family AT3G60390 58.159 2.13e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Eupl05g00365 HD-ZIP_N 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00365 K09338 - nnu:104597569 439.884