Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00316 ATGAGAGAAGAAGACTCGAATTGGTTCTCTCGATGGGAAGAAGAGCTTCCATCTCCGGAGGAGCTTATGCCTCTTACCCAAACCCTAATTACTCCTGACCTTGCTCTTGCTTTCGACATCCCAAACCCTAATACCACTCCTCAACCAACCCCTCCTCCACCTGGCCCACCCCCTCCTTCTTCACAACCCCACTCTGCTGAGTTTGACTCGGGCGAGTTAGGGTCTGGCGCCCCCGGCGACGAGCCGGCTCGGACTCTGAAGCGGCCGCGCCTTGTATGGACTCCTCAGCTCCACAAGCGCTTTGTCGACGCGGTTGCGCATCTTGGGATCAAAAACGCTGTGCCCAAGACAATAATGCAGTTGATGAGCGTCGATGGGTTGACTCGGGAGAACGTCGCGAGTCACTTGCAGAAGTACAGGCTTTACCTCAAGCGGATGCAGGGGCTCTCTACTGGTGGTGGTGGTGGTGGCGGTGGGGGTACGCTGTCGGCCGCTGATGCTGCCACCGACCATTTGTTTGCGAGTGCACCTGTCCCGCATCATTTTCTGCATCCGGGCCGCCCCCCGACGGATCACTACTTGCCGTTTGTGCCTGTGGCGGCGGCGCTTCAGCATCACCACCAGCAGCAGCAGATGGCAGCGGTGGCAGCGGCAGCTGCACAGCAGCAGCAGCAATACCATCATAGGCAGGTGGGGCATTTCGGATCGCCACCCAGTGGGCAATTTGAGCATGGGTTTCTTACGCGGCAGCCACAGCCAGTGCACAGGATGGGAGGACCGGTTTCAGCTCAACCCGCACCTTATGTAGAGGATTTGGAATCGGCTACGGTGGGAGGAGGGAGGAGGGTCCTGACACTTTTTCCTACTGGAGATGATTGA 879 0.5813 MREEDSNWFSRWEEELPSPEELMPLTQTLITPDLALAFDIPNPNTTPQPTPPPPGPPPPSSQPHSAEFDSGELGSGAPGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSTGGGGGGGGGTLSAADAATDHLFASAPVPHHFLHPGRPPTDHYLPFVPVAAALQHHHQQQQMAAVAAAAAQQQQQYHHRQVGHFGSPPSGQFEHGFLTRQPQPVHRMGGPVSAQPAPYVEDLESATVGGGRRVLTLFPTGDD* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00316 292 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 246 IPR044841 GO:0003700|GO:0006355
Eupl05g00316 292 SUPERFAMILY Homeodomain-like 85 145 IPR009057 -
Eupl05g00316 292 Gene3D - 85 147 - -
Eupl05g00316 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 144 IPR017930 -
Eupl05g00316 292 Pfam Myb-like DNA-binding domain 92 140 IPR001005 -
Eupl05g00316 292 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 141 IPR006447 GO:0003677
Eupl05g00316 292 MobiDBLite consensus disorder prediction 1 18 - -
Eupl05g00316 292 FunFam Two-component response regulator 84 147 - -
Eupl05g00316 292 MobiDBLite consensus disorder prediction 44 63 - -
Eupl05g00316 292 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00316 Eupl-Chr5 9336091 9340311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00316 1 292 G2-like Transcription Factor Family AT3G10760 57.434 3.86e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Eupl05g00316 Myb_DNA-binding 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00316 - - nnu:104607866 434.876