LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl05g00266	ATGTTCTCAAGCTTGAAAATGGATGGGCCGGGAACAAAAGGGGGCAGTAGTTCTGAAAGAATTTTGTCTAACTATAGACTGGGGAAAACCCTCGGAATTGGGTCGTTTGGTAAAGTGAAACTTGCTCAACATGTATCGACAGGGCAAAAGGTTGCTATTAAGATCCTAGATCGTCAAACAATTGATGATTCAAATGCAGGAAGAGTGAGGCGAGAGATTAATATGTTGAGATTATTCTCACATCCTCACATTGTACGCCTTTACGAAGTTGTGGAGACACGGTCAAATATTTATGTTGTAATGGAGCATATGAATTGTGGTGAACTGTTCTATTATATCATAGAGAAGGGTAAACTCCAAGAGGATGAGGCTCGCAATTTCTTTCAACAGATTATCTCTGGTGTTGAATGTTGCCACCTCAATATGGTGGTTCATCGAGACCTCAAGCCAGAAAACCTACTTCTGGATTCTAAACGCAATGTTAAAATTGCAGACTTTGGACTTGGCAATGTCATGCGTGATGGTCATTTTTTAAAGACAAGCTGTGGAAGCCCAAACTATGCTGCCCCTGAGGTTATCTCAGGTCAATTATATGCGGGCCCTGAAGTCGATGTTTGGAGTTCTGGTGTCATTTTATATGCTCTTCTTTGTGGAAGGCTTCCATTTGATGATGATAGTCTTCCTTCTTTGTACAAGAGGATTAAGAGTGGAATATACACACTTCCAACTCATTTATCCCCTGGTGCACGGGATTTGATTCTTCGGATCCTTCTTGTTGACCCTATGAAGCGCATAACAATTCCCGAGATTCGTAGGCATCCGTGGTTTCAAGAACATCTTCCACTATACTTAGCTATGCCCCAAATAGATGCAATGCAAAGAGTAAAGAAGATTGATGAGGAAATTCTTCAAGAGGTGGTTAAGATGGGCTTCAACTTGCGTGAAGTGATTGAGTCTCTTCAAAATCGATTGCAAAATCAGGCAACAGTGACATATTATTTGCTGTTGGACAACCGATTTCGTATTTGCAATGGTTACCTTAAAAATGAGATTCAAAAACCCTCGCCACAGGAATATGTGGAACATGTGGGAATATATTCAAGTCCGCAGTTTCCTGCTGAAAGAAAGTGGGCGCTTGGATTTCAGTCTCGAGCTTCTCCTCCTGTAATTATGATAGAGGTTTTGACAGCCCTCCAGAGGTTAAATGTGTGTTGGAAGAAGATAGGACATTACAACATAAAATGCCACTGGTTACCTGGTTTTCACACCTACCCAGGAACTACGCTTAGTAATACTGCTACACAAACGAATCACATCTATAGTAATGAACCTGGGACGGACAGAGTTGGTATTAGGTCACAAAAAGCTATCAAGTTTGAAATGCAGCTTTACAAGGCAAAGGAAGGGAGGTATCTCCTAGATTTGCAGAGGATTCAAGGGCCGCCTTTTCTCTTCCTCGAAATCTGTGCTGCATTTCTTGCACAACTCCGTGTTATATGA	1500	0.4153	MFSSLKMDGPGTKGGSSSERILSNYRLGKTLGIGSFGKVKLAQHVSTGQKVAIKILDRQTIDDSNAGRVRREINMLRLFSHPHIVRLYEVVETRSNIYVVMEHMNCGELFYYIIEKGKLQEDEARNFFQQIISGVECCHLNMVVHRDLKPENLLLDSKRNVKIADFGLGNVMRDGHFLKTSCGSPNYAAPEVISGQLYAGPEVDVWSSGVILYALLCGRLPFDDDSLPSLYKRIKSGIYTLPTHLSPGARDLILRILLVDPMKRITIPEIRRHPWFQEHLPLYLAMPQIDAMQRVKKIDEEILQEVVKMGFNLREVIESLQNRLQNQATVTYYLLLDNRFRICNGYLKNEIQKPSPQEYVEHVGIYSSPQFPAERKWALGFQSRASPPVIMIEVLTALQRLNVCWKKIGHYNIKCHWLPGFHTYPGTTLSNTATQTNHIYSNEPGTDRVGIRSQKAIKFEMQLYKAKEGRYLLDLQRIQGPPFLFLEICAAFLAQLRVI*	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl05g00266	499	ProSiteProfiles	Kinase associated domain 1 (KA1) profile.	450	498	IPR001772	-
	Eupl05g00266	499	Pfam	Kinase associated domain 1	457	498	IPR001772	-
	Eupl05g00266	499	FunFam	CAMK family protein kinase	18	351	-	-
	Eupl05g00266	499	CDD	AMPKA_C	374	496	-	-
	Eupl05g00266	499	PANTHER	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	18	344	-	-
	Eupl05g00266	499	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	143	155	IPR008271	GO:0004672\|GO:0006468
	Eupl05g00266	499	ProSiteProfiles	Protein kinase domain profile.	25	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl05g00266	499	SUPERFAMILY	Protein kinase-like (PK-like)	21	295	IPR011009	-
	Eupl05g00266	499	Gene3D	Transferase(Phosphotransferase) domain 1	15	357	-	-
	Eupl05g00266	499	SMART	serkin_6	25	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl05g00266	499	CDD	UBA_SnRK1_plant	298	338	-	-
	Eupl05g00266	499	SUPERFAMILY	KA1-like	333	498	IPR028375	-
	Eupl05g00266	499	FunFam	Non-specific serine/threonine protein kinase	12	105	-	-
	Eupl05g00266	499	Pfam	Protein kinase domain	25	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl05g00266	499	ProSitePatterns	Protein kinases ATP-binding region signature.	31	54	IPR017441	GO:0005524
	Eupl05g00266	499	CDD	STKc_AMPK_alpha	22	276	-	-
	Eupl05g00266	499	Gene3D	Kinase associated domain 1, KA1	380	497	-	-
	Eupl05g00266	499	ProSiteProfiles	Ubiquitin-associated domain (UBA) profile.	297	337	IPR015940	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl05g00266	Eupl-Chr5	7369798	7424888	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl05g00266	20	284	CBL-interacting serine-threonine protein kinases	AT4G24400	49.627	2.22e-88	275

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_AMPK	Eupl05g00266		Pkinase	2.2e-76	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl05g00266	K07198		-	atr:18427100	689.493