Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00265 ATGGATTCCCAAGTGAAGCTAGCTGTTGTGGTCAAGGTGATGGGACGAACTGGATCTAGAGGACAGGTGACCCAAGTGAGAGTTAAGTTTCTGGATGATCAGAACCGTCTCATCATGAGGAATGTGAAAGGACCTGTACGAGAAGGTGACATACTCACCCTGCTGGAGTCGGAAAGAGAGGCGAGGAGGCTTCGGTGA 198 0.5051 MDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESEREARRLR* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00265 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Eupl05g00265 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Eupl05g00265 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Eupl05g00265 65 Gene3D - 1 65 IPR012340 -
Eupl05g00265 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Eupl05g00265 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Eupl05g00265 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Eupl05g00265 65 FunFam 40S ribosomal protein S28 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00265 Eupl-Chr5 7340291 7348145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00265 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 89.231 1.04e-34 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00265 K02979 - nnu:104586005 101.293