Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00251 ATGTCAAGTGGAAGACACACACATTGGTGTTACAGATGCAGGTGTCCTGTTCGACTCCAAGGGCAGGATGCAGTTTGTCCAAATTGTGATGGAGGCTTTGTGCAAGAACTCAGTGAGATGGAAAGCATTGGGCCACTAGATTTCGTTGGATTAGATTCTGATGAGGATCGTGACCAGAGATTTGGAATAATGGAAGCTTTCTCAGCTATGATGAGGCAACGATTGGCTGGGGGAAACCGTGACATTGATATCAGAAGAAGATCTGGTTTGGTTCCTGAACATAGTATGGGATTCGGTTCTGGTTCTGGTTCTGGTTCTGGTTCTTGGTTGATCATCCGTGGTCAGGTCCCTGTCCGGATGTCAGAAAATGGTGGGATTGAAGTCCTTCTCAGTGGTGGTCCAGGCGTTGGACTGAGGCGCGCTAATGTTGGTGATCTCTTTATGGGTCCGGGACTGGATGAACTGATCGAACAACTCACTCGTAATGATCGACGGGGGCCACCCCCAGCATCTCGGTCTTCAATTGATGCGATGCCGACACTGAAGATCTCCCAGAGGCATCTCCGCACAGATTCGCACTGCCCCATTTGCAAAGAAAGATTCGAGTTGGAATCTGAAGCACGTCAGATGCCTTGTAATCATATATATCACTCTGATTGTATTGTCACATGGTTGGTTCAGCACAACTCATGTCCCGTCTGCCGCCATGAACTGCCAGCACAGGGATCAACTACTGCTCATAGTAACCCGAGCTCGAATGGGGGAAGCAGAAGCAGCAGTTCTAGTAGTAACACCAGTGGCAGGGAGAACAGTTCGGAGAATCATGGGAGGCGTAGTAATCCATTCTCCTTCTTGTGGCCTTTCCGCTCATCGAACTCTAACACACACCACAGGGAATCAGGAGGAAGCAGCTCTGCTGGCATACATGAAGATAGTCACCAGATGAGTTATTCTGGATGGCCCTTTGATTATTAA 975 0.4872 MSSGRHTHWCYRCRCPVRLQGQDAVCPNCDGGFVQELSEMESIGPLDFVGLDSDEDRDQRFGIMEAFSAMMRQRLAGGNRDIDIRRRSGLVPEHSMGFGSGSGSGSGSWLIIRGQVPVRMSENGGIEVLLSGGPGVGLRRANVGDLFMGPGLDELIEQLTRNDRRGPPPASRSSIDAMPTLKISQRHLRTDSHCPICKERFELESEARQMPCNHIYHSDCIVTWLVQHNSCPVCRHELPAQGSTTAHSNPSSNGGSRSSSSSSNTSGRENSSENHGRRSNPFSFLWPFRSSNSNTHHRESGGSSSAGIHEDSHQMSYSGWPFDY* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00251 324 FunFam E3 ubiquitin-protein ligase RING1-like 158 241 - -
Eupl05g00251 324 MobiDBLite consensus disorder prediction 241 279 - -
Eupl05g00251 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 241 IPR013083 -
Eupl05g00251 324 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Eupl05g00251 324 SUPERFAMILY RING/U-box 174 241 - -
Eupl05g00251 324 MobiDBLite consensus disorder prediction 293 314 - -
Eupl05g00251 324 Pfam zinc-ribbon 7 37 IPR039525 GO:0061630
Eupl05g00251 324 MobiDBLite consensus disorder prediction 160 182 - -
Eupl05g00251 324 Pfam Ring finger domain 193 235 IPR001841 -
Eupl05g00251 324 SMART ring_2 194 234 IPR001841 -
Eupl05g00251 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 140 239 - -
Eupl05g00251 324 MobiDBLite consensus disorder prediction 293 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00251 Eupl-Chr5 6922784 6925208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00251 141 240 C3H Transcription Factor Family AT5G01980 50.980 2.75e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00251 K11982 - psom:113310334 471.47