Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl05g00226 | ATGGAGGTGGAAGGAAAAGGAAAGAAAGAAAAGCCGATCTTCAGAGACATCAGGCGTTATTACTGCGATTACTGCGGCATTTGCAGGTCCAAGAAATCTTTCGTTACCTCTCACGTCCTCGCCCACCATAAGGAAGAGATTGAAGCGAAAAGAGTGGATGACAGTGATGAGGAAGAAGAAGAAACAACGTCAAATACTTGTGAAGAGTGTGGTGCGAGTTTTCGTAAGCCAGCTTATTTGACGCAACACATGCAAAGCCATTCTCTTGAGAGGCCGTTTGCTTGCCCAATAGATGACTGCCATTCAAGTTACAGAAGAAAAGACCACCTGACCCGCCACTTGCTCCAGCACCAAGGGAAACTCTTCTCCTGCCCTGTTGAAAATTGCAATCGCAGGTTTGCTTTCCAGGCCAACATGAAGCGGCATGTGAAGGAACTTCATGATGAAGAAGAATCTCCCTTCTGGAACGGCGAGGGGCAGAAGCATCATATTTGCCCAGAAGTTCAGTGCAGAAAGGTGTTTAAATTTGCATCAAAGCTGAGGAAGCATGAAGAGACCCATGTCAAACTGGATTCTGTGGAGGCAATCTGCGGTGAACCTGGCTGTATGAAACACTTCACCAATGCTGAATGTCTCAATGCCCATCTCCGAACTTGCCACCAATATATTACTTGCGAAGTCTGCAGGACTGAGCAGCTGAAGAAAAACATCAAGCGGCACATGTGCACACATGAAGCTGGAGGTGCGTTCGAGAGAATCAAGTGTAGTTTCAAGGGTTGCCTTCACACATTCACAACTAAATCAAATCTCAATCAGCACATAAAGGCAGTACACCTTGAGCTCCGACCATTTGTTTGTCAAATTCCTGGGTGTGACAAGAAGTTCCCGTACAGGCATGTGAGGGACAATCATGAGAAAACTGGACCTCATGTTTATATACATGGTGATTTCGAGGAGTCTGATGAGCAATTCCGATCAAAGCCAAGGGGTGGGCGGAAAAAGAAGTGCCCGACAGTGGAGGCACTGCTGCGGAAGAGGGTCATCCCACCCAGTCAGGCCGATTCAGTTTTGAATCAGGGACCTGAGTACCTAGCTTGGCTACTTTCAGCAACTGAGGGCCAGCAGGAAGTAATGATGGGTAGTTAG | 1146 | 0.4729 | MEVEGKGKKEKPIFRDIRRYYCDYCGICRSKKSFVTSHVLAHHKEEIEAKRVDDSDEEEEETTSNTCEECGASFRKPAYLTQHMQSHSLERPFACPIDDCHSSYRRKDHLTRHLLQHQGKLFSCPVENCNRRFAFQANMKRHVKELHDEEESPFWNGEGQKHHICPEVQCRKVFKFASKLRKHEETHVKLDSVEAICGEPGCMKHFTNAECLNAHLRTCHQYITCEVCRTEQLKKNIKRHMCTHEAGGAFERIKCSFKGCLHTFTTKSNLNQHIKAVHLELRPFVCQIPGCDKKFPYRHVRDNHEKTGPHVYIHGDFEESDEQFRSKPRGGRKKKCPTVEALLRKRVIPPSQADSVLNQGPEYLAWLLSATEGQQEVMMGS* | 382 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl05g00226 | 381 | Gene3D | Classic Zinc Finger | 151 | 223 | - | - | |
| Eupl05g00226 | 381 | Gene3D | Classic Zinc Finger | 120 | 150 | - | - | |
| Eupl05g00226 | 381 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 93 | 122 | IPR013087 | - | |
| Eupl05g00226 | 381 | SUPERFAMILY | beta-beta-alpha zinc fingers | 103 | 151 | IPR036236 | - | |
| Eupl05g00226 | 381 | Gene3D | Classic Zinc Finger | 250 | 337 | - | - | |
| Eupl05g00226 | 381 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 255 | 278 | IPR013087 | - | |
| Eupl05g00226 | 381 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 95 | 117 | IPR013087 | - | |
| Eupl05g00226 | 381 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 65 | 92 | IPR013087 | - | |
| Eupl05g00226 | 381 | Gene3D | Classic Zinc Finger | 7 | 92 | - | - | |
| Eupl05g00226 | 381 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 124 | 147 | IPR013087 | - | |
| Eupl05g00226 | 381 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 67 | 87 | IPR013087 | - | |
| Eupl05g00226 | 381 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 253 | 283 | IPR013087 | - | |
| Eupl05g00226 | 381 | SUPERFAMILY | beta-beta-alpha zinc fingers | 234 | 293 | IPR036236 | - | |
| Eupl05g00226 | 381 | SUPERFAMILY | beta-beta-alpha zinc fingers | 66 | 117 | IPR036236 | - | |
| Eupl05g00226 | 381 | FunFam | Zinc finger 45-like | 66 | 88 | - | - | |
| Eupl05g00226 | 381 | SMART | c2h2final6 | 223 | 244 | IPR013087 | - | |
| Eupl05g00226 | 381 | SMART | c2h2final6 | 195 | 220 | IPR013087 | - | |
| Eupl05g00226 | 381 | SMART | c2h2final6 | 93 | 117 | IPR013087 | - | |
| Eupl05g00226 | 381 | SMART | c2h2final6 | 122 | 147 | IPR013087 | - | |
| Eupl05g00226 | 381 | SMART | c2h2final6 | 20 | 42 | IPR013087 | - | |
| Eupl05g00226 | 381 | SMART | c2h2final6 | 284 | 310 | IPR013087 | - | |
| Eupl05g00226 | 381 | SMART | c2h2final6 | 253 | 278 | IPR013087 | - | |
| Eupl05g00226 | 381 | SMART | c2h2final6 | 163 | 187 | IPR013087 | - | |
| Eupl05g00226 | 381 | SMART | c2h2final6 | 65 | 87 | IPR013087 | - | |
| Eupl05g00226 | 381 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 286 | 310 | IPR013087 | - | |
| Eupl05g00226 | 381 | Gene3D | Classic Zinc Finger | 93 | 119 | - | - | |
| Eupl05g00226 | 381 | Pfam | Zinc finger, C2H2 type | 254 | 278 | IPR013087 | - | |
| Eupl05g00226 | 381 | Pfam | Zinc finger, C2H2 type | 93 | 117 | IPR013087 | - | |
| Eupl05g00226 | 381 | Pfam | Zinc finger, C2H2 type | 66 | 87 | IPR013087 | - | |
| Eupl05g00226 | 381 | Pfam | Zinc finger, C2H2 type | 122 | 147 | IPR013087 | - | |
| Eupl05g00226 | 381 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 122 | 152 | IPR013087 | - | |
| Eupl05g00226 | 381 | PANTHER | ZINC FINGER PROTEIN | 6 | 370 | - | - | |
| Eupl05g00226 | 381 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 163 | 192 | IPR013087 | - | |
| Eupl05g00226 | 381 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 165 | 187 | IPR013087 | - | |
| Eupl05g00226 | 381 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 197 | 220 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl05g00226 | Eupl-Chr5 | 6108939 | 6116112 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl05g00226 | 89 | 313 | C2H2 Transcription Factor Family | AT1G72050 | 46.014 | 1.08e-84 | 258 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Eupl05g00226 | zf-C2H2 | 0.0093 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl05g00226 | K09191 | - | nnu:104593605 | 588.186 |