Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00208 ATGGGAAATTGCTTGAGAAGACCTGCAAGATGTGCTCATGCCTCTTCTTCATCAACTTCTTCAGTGACCCCAAAACCTGGCAAGACTACCTTGAATTCAACGCCTTCCAGCCAGGAAATACCATCTACCACTTTGAGCAAAACTACTCTCCCGACAACCAAAAGTGATGCATCAACCTCGTCCAGTCTCAAGTCCTTCAGCTTCAATGATCTCAAGAATGCCACCAGGAACTTCCGCACAGACAGTCTTCTTGGCGAAGGAGGATTTGGGTGCGTCTTCAAAGGATGGATTGATGAGCACACTTCTGCTCCCACCAAACCAGGAGTTGGAATTGTTGTGGCCATCAAGAAACTCAAGATGGAAAGCTTCCAAGGCCACAAGGAATGGCTTGCAGAAGTTAACTACTTGGGTCAGCTTCGCCATGAGAATCTCGTGAAACTAATTGGATACTGCTCAGAATCTGACAACAGACTCCTAGTTTACGAGTTTATGCCGAGGGGCAGTTTGGAAAATCATTTATTTAGAAGAGGTGTTCAACCTATATCGTGGGCGACACGAATGAGTATCGCCATTGGTGTTGCTCAGGGACTATCCTTCTTACATAATTTAGAGACCCATGTAATCTACCGTGATCTAAAGGCTTCCAACATTCTCCTCGACTCGGACTTCAACGCAAAGCTTTCGGATTTTGGCTTAGCTAGGGATGGTCCTACTGGAGATAACACTCATGTTTCGACCCGAGTCGTGGGAACTCGGGGTTATGCTGCCCCAGAATATGTAGCAACAGGTCACTTGACCATAAAGAGCGATGTGTACAGCTTTGGAGTCGTCTTGTTAGAGTTGTTATCAGGTAAACGGGCGATGGATGAAGAGAGATTCAGTGTTGAGGAGAGCCTGGTCGATTGGGCAAAGCCATTCCTAAGCGACAACAGAAGAGTATTAAGAGTCATGGACACAAGGTTGGGGGGTCAGTACTCCAAGAAAGGAGCCCAGGCAACTGCTGCACTAGCTCTTCAGTGCCTCCATACAGACCCCAAGTATAGGCCCCACATGAAAGATGTTCTCACCACATTGGAACAACTCCAGACATCAAAAGACACTCCAAGGACCCCACAAAGGGCCCCACCAACTAAACTCGATCATCGTGGGATAAAACATACTGGTTACAATCACAGGGCAACTCCAACTGCAAACTCAGTCTGA 1203 0.4713 MGNCLRRPARCAHASSSSTSSVTPKPGKTTLNSTPSSQEIPSTTLSKTTLPTTKSDASTSSSLKSFSFNDLKNATRNFRTDSLLGEGGFGCVFKGWIDEHTSAPTKPGVGIVVAIKKLKMESFQGHKEWLAEVNYLGQLRHENLVKLIGYCSESDNRLLVYEFMPRGSLENHLFRRGVQPISWATRMSIAIGVAQGLSFLHNLETHVIYRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVVGTRGYAAPEYVATGHLTIKSDVYSFGVVLLELLSGKRAMDEERFSVEESLVDWAKPFLSDNRRVLRVMDTRLGGQYSKKGAQATAALALQCLHTDPKYRPHMKDVLTTLEQLQTSKDTPRTPQRAPPTKLDHRGIKHTGYNHRATPTANSV* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00208 400 FunFam Serine/threonine-protein kinase BIK1 45 163 - -
Eupl05g00208 400 CDD STKc_IRAK 84 361 - -
Eupl05g00208 400 MobiDBLite consensus disorder prediction 1 63 - -
Eupl05g00208 400 Pfam Protein tyrosine and serine/threonine kinase 81 358 IPR001245 GO:0004672|GO:0006468
Eupl05g00208 400 MobiDBLite consensus disorder prediction 12 63 - -
Eupl05g00208 400 Gene3D Transferase(Phosphotransferase) domain 1 164 376 - -
Eupl05g00208 400 SUPERFAMILY Protein kinase-like (PK-like) 56 373 IPR011009 -
Eupl05g00208 400 PANTHER OS01G0588500 PROTEIN-RELATED 39 362 - -
Eupl05g00208 400 Gene3D Phosphorylase Kinase; domain 1 52 163 - -
Eupl05g00208 400 MobiDBLite consensus disorder prediction 360 400 - -
Eupl05g00208 400 SMART serkin_6 78 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g00208 400 FunFam Serine/threonine-protein kinase PBS1 164 375 - -
Eupl05g00208 400 ProSitePatterns Protein kinases ATP-binding region signature. 84 117 IPR017441 GO:0005524
Eupl05g00208 400 ProSiteProfiles Protein kinase domain profile. 78 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g00208 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00208 Eupl-Chr5 5512665 5518549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00208 39 366 Glycoside Hydrolase AT3G07070 47.734 1.06e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Eupl05g00208 PK_Tyr_Ser-Thr 3.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00208 - - nnu:104593579 620.157