Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00163 ATGTATCATGCCAAGAAATTTTCAACTGTGGGCTTAGTGCCCCATAAGCCCCAGGGTGCTGAGCAGTTTACAAATATTGGAGTCTCGGGGGCGTCCACGGTAAACAATTCAGCTACTTCTGGGGGAAGCGGAAAGCAACGGTTGCGATGGAATTCAGAGCTTCATGATCGATTTGTGGATGCCATTACGCAACTCGGAGGACCAGATAGAGCAACACCAAAAGGTGTTCTTAGGGTGATGGGTGTACCTGGACTTACTATTTACCATGTGAAAAGCCACTTACAGAAATATCGCCTCGCAAAGTACCTTCCTGAATCTCCAGCCGACGGTTCAAAAGACGAGAAGAAGGATTCTGGCGATAGCCTTTCTAGCATGGATTCTGCCCCGGGAGTACAAATCAATGAGGCACTCAGGATGCAGATGGAGGTGCAGAAGCGTCTCCACGAACAGCTTGAGGTGCAAAGACAGTTGCAGCTGAGAATTGAAGCTCAGGGGAAGTACTTGCAAAAGATTATTGAGGAGCAGCAGAAACTAGGTGGTGCACTCGAAGCATCCGAGCCTTTGCTAGTGACTGAGGAAAAACAAAGGCCTTCCCCACCACCTTCTGATGCCCTGGTGGGGCCTCAATCTCCTCTCAAAAAGCAGAGGGTGGATGATGGGTCTACAGATCCTGCCCCATCCGCAGGCCCACCGAGGAGTGACAAGAAGTCCAATTTTATTGGTCAGTGGGATCAGGACTTGTATGGAAGTGATGTCATCGGGTTTGGATTTGAGGTGGAGACCAAGTTCAAAGATGGGGAAAGCGGTGGGACAGATCAGAGAGCCTCACGGGCGGCGGAGCCTACTTCTGGTACAGGAGGGAGTTCATCTTCATAG 876 0.5034 MYHAKKFSTVGLVPHKPQGAEQFTNIGVSGASTVNNSATSGGSGKQRLRWNSELHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGSKDEKKDSGDSLSSMDSAPGVQINEALRMQMEVQKRLHEQLEVQRQLQLRIEAQGKYLQKIIEEQQKLGGALEASEPLLVTEEKQRPSPPPSDALVGPQSPLKKQRVDDGSTDPAPSAGPPRSDKKSNFIGQWDQDLYGSDVIGFGFEVETKFKDGESGGTDQRASRAAEPTSGTGGSSSS* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00163 291 MobiDBLite consensus disorder prediction 190 241 - -
Eupl05g00163 291 MobiDBLite consensus disorder prediction 262 291 - -
Eupl05g00163 291 SUPERFAMILY Homeodomain-like 44 99 IPR009057 -
Eupl05g00163 291 Pfam MYB-CC type transfactor, LHEQLE motif 131 177 IPR025756 -
Eupl05g00163 291 FunFam Myb family transcription factor 44 102 - -
Eupl05g00163 291 MobiDBLite consensus disorder prediction 104 129 - -
Eupl05g00163 291 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Eupl05g00163 291 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 43 189 IPR044848 GO:0003700
Eupl05g00163 291 MobiDBLite consensus disorder prediction 107 121 - -
Eupl05g00163 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Eupl05g00163 291 MobiDBLite consensus disorder prediction 275 291 - -
Eupl05g00163 291 Coils Coil 134 154 - -
Eupl05g00163 291 Gene3D - 44 103 - -
Eupl05g00163 291 Pfam Myb-like DNA-binding domain 48 98 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00163 Eupl-Chr5 4175083 4211953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00163 33 175 G2-like Transcription Factor Family AT4G28610 58.741 3.81e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Eupl05g00163 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00163 - - nnu:104593509 417.927