Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00162 ATGGAGGGCTCTGAGGCAGAAGGAACACAGACTCCAGAGGCCTTGCCGCCGCCTCCACCTATACCACCAAATGTAGTTCCATTGCGAGCAGAAGCAGGGAACATCCCCGAGCCTATTAAGAAGGTTTCAAGGCCCAAACGTGTGCCAATGCCTAGGGTTGGCTTTGGGCGTAAAGGGCAAATGATACCACTGCAAACTAATCATTTTAAAGTTGGTGTTACTAATGTTGACGGCCACTTTTTTCACTACAGTGTTTCCTTGTTTTATGAAGATGGCCGCCCGGTAGATGGGAAGAGTATCGGAAGAAGAGTGATTGATAGAGTTCATGAGACTTATGATACTGAGCTAGGTGGGAAGGATTTCGCTTATGATGGGGAAAAAAGCTTGTTTACTGTTGGTCCTCTCCCACGCAACAAACTGGACTTCACTGTTGTGCTTGAGGATATCTCATCAAATAGAACTGCTGGAAATGGCAGCCCTGGCGGTAGTGGAAGTCCAAATGAGAGCGATAGGAAGAGGTTAAGGCGTCCCTACCAGTCGAAAACTTATAAAGTAGAGATGAGTTTTGCTGCCAAAATTCCGATGCAGGCCATTGCAAATGCACTGCGTGGTCAGGAATCAGAGAACTCTCAAGAAGCTGTGAGAGTTCTGGATATCATTTTACGACAGCATGCAGCAAAACAGGGCTGCCTTCTTGTCCGTCAATCGTTCTTCCACAATAACCCCAATAACTTCACTGACCTGGGAGGTGGAGTCCTGGGATGCAGAGGTTTTCATTCCAGTTTTAGAGCAACTCAAGGTGGTTTATCATTGAACATTGATGTATCAACTACAATGATAGTGCAGCCAGGACCAGTGGTAGATTTTCTGGTTACAAACCAAAATGTGAGGGATCCTCGTGAGATTAACTGGGATAAGGCTAAACGAATGCTCAAAAATCTGAGGATAAAGGCTAGTCCCTCTAACATGGAATATAAAATAACTGGATTGAGTCAGCTGCCTTGTGACGAACAAATGTTTACTTTAAAACAGAAGAATGGGAGGGATGCAAATGGTGATGGTGAGGTCCAATCTATTGAAGTGACAGTGTATGATTATTTTGTTAATTACCGCCATATAGAGTTGCGTTATTCTGCAAGGCTGCCATGTATTAATGTTGGGAAACCAAAGCGGCCGACTTACTTCCCACTTGAGCTTTGTTCGTTAGTTTCCTTACAACGCTATACGAAGGCATTATCCACCTTCCAAAGATCTTCACTAGTAGAGAAATCAAGACAAAAGCCCCAAGAAAGGATGAAGGTTTTGACTGATGCTTTGAAGAGCAACAATTATGATGCTGACCCAATGTTGCGTTCCTGTGGCATTTCAATTAATACTCACTTTACTCAAGTTGAAGGACGTGTTCTGTCGGCTCCAAAGTTGAAAGTGGGTAATGGAGAGGATTTCTTTCCTAGAAATGGGAGATGGAACTTTAACAATAAGAAACTAGTGGAACCAACAAAAATTGAACGTTGGGCTTGTGTAAACTTCTCGGCTCGCTGTGATGCACGCAATCTTTGCGAAGATCTAATCAGATGCGGACAGCAGAAAGGAGTTTTCATAGATCCTCCATTTGATGTAATTGACGAGAATCCTCAATCAAAACGGGCTCCTCCTCTTGTTAGAGTGGAGCACATGTTTGAACAGATACAGTCAAAACTTCCTGGGGCCCCCAAGTTTCTTCTCTGTCTTCTTCCAGAGCGGAAAAACTCTGACATCTACGGTCCATGGAAGAGGAAGAATCTTGCAGAGTTTGGAATTGTTACTCAATGCATTGCACCTACACGAGTCAATGACCAATACCTTACAAATGTTCTCTTGAAAATCAATGCAAAACTTGGTGGTATGAATTCCTTCTTGTCTGTCGAACATTCTCCTTCTTTCCTTGTGTCTAAAATTCCCACCATTATCCTTGGGATGGATGTCTCGCATGGCTCTCCTGGCCAGTCTGATGTTCCCTCTATTGCTGCGGTGGTCAGCTCCAGGCAGTGGCCGTTCATTTCTCGTTATAGAGCATCAGTGAGGACGCAATCACCAAAGGTTGAAATGATAGATTCTCTATTTAAGCAAATATCAGATACTGAAGATGGAGGCATAATTCGGGAGCTATTGCTGGACTTCTATAGAAGTTCAGGAAAAAGGAAGCCTGATCAGATAATCATTTTCAGGGATGGTGTCAGCGAATCACAATTCAACCAAGTCTTAAACATCGAACTGGATCAAATCATTGAGGCCTGTAAGTTCCTCGACGAGAAGTGGGATCCTAAGTTTACAGTGATTGTTGCACAAAAAAATCACCATACGAAATTCTTCCAAATTGGATCTCCCGATAATGTTCCACCTGGGACAGTTATTGACAACAAAATTTGCCATCCGCGAAACAATGATTTCTACATGTGTTCGCATGCTGGGATGATTGGGACGACCAGACCTACGCATTACCATGTTCTGTTAGATGAAATTGGATTTTCTGCCGATGATCTGCAGGAACTTGTGCACTCTCTTTCCTATGTGTACCAGCGGAGCACCACAGCCATTTCCGTAGTTGCTCCCATATGCTATGCTCATCTTGCGGCCAGCCAGGTGTCACAGTTCCTGAAGTTTGATGAAATGTCAGAAACATCTTCAAGCCATGGTGGGTTGACATCTGCTGGGGGAATCCCAGTTCCTGAATTGCCCAGGCTTCATGACAATGTGAGCAGTTCCATGTTCTTTTGTTAA 2760 0.4391 MEGSEAEGTQTPEALPPPPPIPPNVVPLRAEAGNIPEPIKKVSRPKRVPMPRVGFGRKGQMIPLQTNHFKVGVTNVDGHFFHYSVSLFYEDGRPVDGKSIGRRVIDRVHETYDTELGGKDFAYDGEKSLFTVGPLPRNKLDFTVVLEDISSNRTAGNGSPGGSGSPNESDRKRLRRPYQSKTYKVEMSFAAKIPMQAIANALRGQESENSQEAVRVLDIILRQHAAKQGCLLVRQSFFHNNPNNFTDLGGGVLGCRGFHSSFRATQGGLSLNIDVSTTMIVQPGPVVDFLVTNQNVRDPREINWDKAKRMLKNLRIKASPSNMEYKITGLSQLPCDEQMFTLKQKNGRDANGDGEVQSIEVTVYDYFVNYRHIELRYSARLPCINVGKPKRPTYFPLELCSLVSLQRYTKALSTFQRSSLVEKSRQKPQERMKVLTDALKSNNYDADPMLRSCGISINTHFTQVEGRVLSAPKLKVGNGEDFFPRNGRWNFNNKKLVEPTKIERWACVNFSARCDARNLCEDLIRCGQQKGVFIDPPFDVIDENPQSKRAPPLVRVEHMFEQIQSKLPGAPKFLLCLLPERKNSDIYGPWKRKNLAEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGMNSFLSVEHSPSFLVSKIPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPFISRYRASVRTQSPKVEMIDSLFKQISDTEDGGIIRELLLDFYRSSGKRKPDQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWDPKFTVIVAQKNHHTKFFQIGSPDNVPPGTVIDNKICHPRNNDFYMCSHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVSQFLKFDEMSETSSSHGGLTSAGGIPVPELPRLHDNVSSSMFFC* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00162 919 CDD PAZ_argonaute_like 283 403 - -
Eupl05g00162 919 Pfam PAZ domain 287 420 IPR003100 GO:0005515
Eupl05g00162 919 Pfam Argonaute linker 2 domain 430 475 IPR032472 -
Eupl05g00162 919 Pfam Argonaute linker 1 domain 233 281 IPR014811 -
Eupl05g00162 919 ProSiteProfiles Piwi domain profile. 573 880 IPR003165 GO:0003676
Eupl05g00162 919 CDD Piwi_ago-like 448 879 IPR045246 -
Eupl05g00162 919 Gene3D - 468 634 - -
Eupl05g00162 919 FunFam Protein argonaute 7 278 408 - -
Eupl05g00162 919 ProSiteProfiles PAZ domain profile. 325 404 IPR003100 GO:0005515
Eupl05g00162 919 MobiDBLite consensus disorder prediction 151 166 - -
Eupl05g00162 919 Gene3D paz domain 277 408 - -
Eupl05g00162 919 MobiDBLite consensus disorder prediction 1 26 - -
Eupl05g00162 919 SUPERFAMILY PAZ domain 278 445 IPR036085 GO:0005515
Eupl05g00162 919 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 45 882 - -
Eupl05g00162 919 Pfam Piwi domain 574 880 IPR003165 GO:0003676
Eupl05g00162 919 Gene3D - 640 919 IPR036397 GO:0003676
Eupl05g00162 919 SUPERFAMILY Ribonuclease H-like 558 878 IPR012337 -
Eupl05g00162 919 SMART Piwi_a_2 573 880 IPR003165 GO:0003676
Eupl05g00162 919 MobiDBLite consensus disorder prediction 12 26 - -
Eupl05g00162 919 MobiDBLite consensus disorder prediction 151 177 - -
Eupl05g00162 919 SMART DUF1785_2 231 283 IPR014811 -
Eupl05g00162 919 FunFam Protein argonaute 3 641 919 - -
Eupl05g00162 919 Pfam N-terminal domain of argonaute 61 221 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00162 Eupl-Chr5 4141178 4151810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00162 51 919 Eukaryotic Initiation Factors Gene Family AT5G43810 36.093 1.28e-171 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00162 K11593 - csin:114304184 1553.5