LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl05g00160	ATGGCGAAGAAGCGAAAGCTCGAGACCAAATCCGAAACTGAGCCCACCAACGTAGCTGAACAACAGCCGCAACAACAAGAAGAACAAATCCATTTCAATGAAGAAGAAGAAGAAATAGAAGAAGAACAAGAAGACTTCGGAGCCGAAGAATCCGAAGAAGACGAAGAAGAAGAAACCCTAAATACCGATAATCCTCCCAACGCTTCCAACTCCAATTCCACCACAGCAGCAGCAGCAGAATCCGCACCGTCAACCGCAAAGGTCGATGAAGGCGACGATGACGACGACGACGATGACGATGGCGAAGATTCTGTAGAACCCGTCCATAAGCTTCTAGAACCATTTACCAAGGACCAGCTTACCGATCTCCTCCGCGAAGCTGCCGAGAAGCACCCGGACATCCTCGAACACATCCACAAGCTCGCCGACGTTGACCCCGTCCACCGCAAGATATTTGTCCACGGCCTCGGCTGGGACACCAACGCCGAGACTCTCACCAACTACTTCAAGAAGTACGGCGAGATCGAGGACTGCAAAGCCGTTTGCGACAAGATCTCGGGCAAATCCAAGGGCTACGGATTCATCCTCTTCAAGCACCGGAGCGGGGCTCGCAAAGCACTCAAGCAGCCCCAGAAGCGGATTGGCAATCGGATGACTGCGTGCCAGCTTGCTTCGTTGGGACCGGTCCCACCTCCGGCGCCTCCTGCACCTCCAGTTTCGGAGTACACTCAGCGGAAGATCTACGTGAGCAATGTTTCGGCCGATATTGATCCTCAGAAGCTGCTCAATTTCTTTGCCAAATACGGAGAGATCGAGGAAGGTCCATTAGGGTTAGATAAGCACACTGGGAAGCCAAAGGGTTTTGCGCTTTTTGTGTACAGGTCTGTTGAGAGCTCAAAGAAGGCGTTGGAAGATCCGCACAAGAACTTCGAAGGGCATATCTTGCATTGTCAGAAGGCCATCGACGGGCCGAAGCCAAACAAGCCTTACTACCACCACCATAACCAGTCTGGCGGTGGACATGGTTCACATTTCCCGCGGAACGAAAACCCTAATTTTACTGGGAGGATGGGGAGTCATGCGTCTGCTGCCGCGGGGCCTGGAGGGCATTTGATGGCATCCTCGCCAGCAGGCATGCCATTCAACCAGGGGGCTCCACAGGCGTTGAACCCGGTGTTGGGGCAGGCTATAACGGCATTGCTTGCGACCCAGGGCGGTGCTGGGTTGGGCTTGACAAACCTGCTTGGTACACTTGGGTCGACTGGTATGGGGGCGACAGTCAACCAGACCATGCAACCGATGGTGAACAATGCAATACAGGGTGGGTATGGGAATCAGCCTGTGGGAAGTAACATTAGCCCGAGTGTGATGGCTGGTTATGGGAATCAAGCTGGGATGCAGGGTGGTTACCCAAACGCTCAAATGGGGCAGGCCAATGCTGGGAGGTCGCAGCAGGGTGTTGGTCACATGGGTGGCGCACCTTACATGGGTCACTAG	1497	0.5411	MAKKRKLETKSETEPTNVAEQQPQQQEEQIHFNEEEEEIEEEQEDFGAEESEEDEEEETLNTDNPPNASNSNSTTAAAAESAPSTAKVDEGDDDDDDDDDGEDSVEPVHKLLEPFTKDQLTDLLREAAEKHPDILEHIHKLADVDPVHRKIFVHGLGWDTNAETLTNYFKKYGEIEDCKAVCDKISGKSKGYGFILFKHRSGARKALKQPQKRIGNRMTACQLASLGPVPPPAPPAPPVSEYTQRKIYVSNVSADIDPQKLLNFFAKYGEIEEGPLGLDKHTGKPKGFALFVYRSVESSKKALEDPHKNFEGHILHCQKAIDGPKPNKPYYHHHNQSGGGHGSHFPRNENPNFTGRMGSHASAAAGPGGHLMASSPAGMPFNQGAPQALNPVLGQAITALLATQGGAGLGLTNLLGTLGSTGMGATVNQTMQPMVNNAIQGGYGNQPVGSNISPSVMAGYGNQAGMQGGYPNAQMGQANAGRSQQGVGHMGGAPYMGH*	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl05g00160	498	MobiDBLite	consensus disorder prediction	326	354	-	-
	Eupl05g00160	498	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	151	214	IPR000504	GO:0003723
	Eupl05g00160	498	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	247	313	IPR000504	GO:0003723
	Eupl05g00160	498	MobiDBLite	consensus disorder prediction	1	113	-	-
	Eupl05g00160	498	SUPERFAMILY	RNA-binding domain, RBD	229	348	IPR035979	GO:0003676
	Eupl05g00160	498	MobiDBLite	consensus disorder prediction	31	61	-	-
	Eupl05g00160	498	MobiDBLite	consensus disorder prediction	476	498	-	-
	Eupl05g00160	498	MobiDBLite	consensus disorder prediction	89	103	-	-
	Eupl05g00160	498	MobiDBLite	consensus disorder prediction	14	28	-	-
	Eupl05g00160	498	MobiDBLite	consensus disorder prediction	62	81	-	-
	Eupl05g00160	498	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	17	337	-	-
	Eupl05g00160	498	SMART	rrm1_1	246	318	IPR000504	GO:0003723
	Eupl05g00160	498	SMART	rrm1_1	150	222	IPR000504	GO:0003723
	Eupl05g00160	498	SUPERFAMILY	RNA-binding domain, RBD	148	232	IPR035979	GO:0003676
	Eupl05g00160	498	Coils	Coil	25	59	-	-
	Eupl05g00160	498	Gene3D	-	137	226	IPR012677	-
	Eupl05g00160	498	Gene3D	-	236	351	IPR012677	-
	Eupl05g00160	498	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	245	321	IPR000504	GO:0003723
	Eupl05g00160	498	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	149	254	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl05g00160	Eupl-Chr5	4060123	4065594	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl05g00160	244	324	C2H2 Transcription Factor Family	AT2G19380	33.333	2.01e-09	58.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl05g00160	K12741		-	nnu:104593504	615.15