Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00150 ATGAGTAGTAGAAAGGAAGAGGAGCGAAATGAGAAGATTATTCGAGGTCTCATGAAGCTTCCTCCGAACAGAAGATGCATCAATTGTAATAGCCTGGGTCCTCAGTATGTCTGCACAAATTTCTGGACTTTTGTCTGTATAACCTGCAGCGGGATACATCGCGAGTTTACTCACCGTGTGAAGTCTGTATCCATGGCAAAATTCACTTCCCAAGAAGTTGAAGCTCTTCAAAGAGGTGGTAATCAGCGTGCAAGGGAAGTGTTTCTGACAGATTGGGACCTACAAAGGCAAAGATTGCCTGATAGCAGTAATGTTGATAGAGTCCGTGAGTTTATAAAGAATGTCTATGTGGATAGGAGATACGCTGGAGGAAAGACCTCTGACAAACCTCCAAGAGACATGCAGAGCCTTAGAAATCATGAAGATGACACCAGACGGGCCAGTTCATACCATTCCTATTCTCAGAGTCCGCCATATGAATATCAATATGAAGATCGGAAGTATGGCAGACAAGCTGGGGTGCTTACTAGAAAGCCCGGTTCAGATCGAGGCCATTATGAAGGGAAAATCTCTAGCTTGACCTACAGTCCAGGACGCTTAGGAGAGCAAATGTACGAGGATAGATTTGCCAATGAGGGCTCTAGTTCCAGAGTTCCGGACTACTCTGTGTCCAGCAGAGGTGATCCATTCAGAACTGATACCCAGTCACCTAATTTTCAAAAGGACATCGGATTTAGCAGCCCTCCTATTTATCCTGTAAGGGATATCTTAGTCGAAGATGCACGGTGCCAAACAACACGTACAAATTCGGAGGCAAATGCCAAGAGAGATGCGGATGGGATTACATATCCACAGAGAACTGCATCTTTAGGCAGCTTTGGATCCTTTGATAGCAACTCCATGTCTCTGAAATCAGTTAATTCAGGTAGCTTAATTGATGCTGTCTTTGAACCTGAACAATCTGCTGGGACCCAGTCAGATGGAATGTCTTCTGTTCCTTCTTTACCACTACCATCTGTTTCTGTTAATGCTGCGGGCCTTGACCTTTTTAGTGCACTGTTTGTACAACAAACTACAACTTCTTCAGCTCCATCTATAGATTTGTTTGCTGACATTACTCATCAGCACTTAGCTACATCCTCTTTGGAGCAAAAAGCATCGGCAATTTCTTTCCCAGAAACTGAAGGTTGGGCGACATTCGACTTAACCCAACATGGGGCATCTGCCCCTGAAACGAAAAATGTACCCCCTGCTAGTATACCTCCTGCTGTTGCAGCACCTTTTGGAAGCTTTGATGCACTTTCTTCCATAAATGTGAGCATGCAGAGGCCATTGGACCAAAGTTCCACAGCTAATGGGTCTTTTTTGTCTGTGGATAATCCACGACTTGGGGGTCTGCATGATGTTCAAGCTTCCAGTGGCCCAACAATCACTGAGCCGTGGAATGCTTTTGAAGATTCTACTGGAAGCCTTCCTCAAGTTTCCTTTGAGAATGTGCCACATAAGACCGAACCACAAGTTCTGGCATATAATCCTCCTGCAACTGTTGATCAGTACTTGAGCTATAAAGTTCCAGAGGACTCAAGCAAAGAAGGGTTTGAAAGAGCTAACCTAGAAGATAGATCTCCAGTTCCTAATACAGCAATTAATGGTGTCATCGCTGGATCTTTGTACAGTCCATCAGTGCCTCCTTTGACGGGAGGAATGCCATCACATGCTATTGATCAGAAATCTACAAATCCATTTGATCTTCTGTATGATTTTGATTTGGAGCCTAGCAGTAAGTTCTTGGGCATGAGCTCTTTGCAAGCAGCACTGCCTGAGCCCCAGTTATCACCTGCCCTCCTCGGTGGCCTAACTGAACCATGGTTCCCTCAGAATTCAGTCACACCCTATATTCCAGCAGAACCACAGGGAGGTTTATCGTACATGGCAGGGCAAGCACCAAGCCCTCAATTGATGAATATCCCTTCGCAAGGCCCTGTTGCATCGCTCGGTGGGAATCCTTTCGTGTAA 2016 0.4529 MSSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCITCSGIHREFTHRVKSVSMAKFTSQEVEALQRGGNQRAREVFLTDWDLQRQRLPDSSNVDRVREFIKNVYVDRRYAGGKTSDKPPRDMQSLRNHEDDTRRASSYHSYSQSPPYEYQYEDRKYGRQAGVLTRKPGSDRGHYEGKISSLTYSPGRLGEQMYEDRFANEGSSSRVPDYSVSSRGDPFRTDTQSPNFQKDIGFSSPPIYPVRDILVEDARCQTTRTNSEANAKRDADGITYPQRTASLGSFGSFDSNSMSLKSVNSGSLIDAVFEPEQSAGTQSDGMSSVPSLPLPSVSVNAAGLDLFSALFVQQTTTSSAPSIDLFADITHQHLATSSLEQKASAISFPETEGWATFDLTQHGASAPETKNVPPASIPPAVAAPFGSFDALSSINVSMQRPLDQSSTANGSFLSVDNPRLGGLHDVQASSGPTITEPWNAFEDSTGSLPQVSFENVPHKTEPQVLAYNPPATVDQYLSYKVPEDSSKEGFERANLEDRSPVPNTAINGVIAGSLYSPSVPPLTGGMPSHAIDQKSTNPFDLLYDFDLEPSSKFLGMSSLQAALPEPQLSPALLGGLTEPWFPQNSVTPYIPAEPQGGLSYMAGQAPSPQLMNIPSQGPVASLGGNPFV* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00150 671 MobiDBLite consensus disorder prediction 122 148 - -
Eupl05g00150 671 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Eupl05g00150 671 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Eupl05g00150 671 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Eupl05g00150 671 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Eupl05g00150 671 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Eupl05g00150 671 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Eupl05g00150 671 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Eupl05g00150 671 CDD ArfGap_AGFG 11 121 - -
Eupl05g00150 671 PANTHER ARFGAP/RECO-RELATED 1 670 IPR044820 GO:0005096
Eupl05g00150 671 SMART arf_gap_3 11 130 IPR001164 GO:0005096
Eupl05g00150 671 MobiDBLite consensus disorder prediction 210 245 - -
Eupl05g00150 671 MobiDBLite consensus disorder prediction 215 243 - -
Eupl05g00150 671 MobiDBLite consensus disorder prediction 122 197 - -
Eupl05g00150 671 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00150 Eupl-Chr5 3852287 3866863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00150 14 121 C2H2 Transcription Factor Family AT3G07940 32.743 2.19e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00150 K15044 - nnu:104589242 838.565