Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00123 ATGCCAACATCTTCTTCTTCAATCCATCTCTCTTGCCAATTCAACAGAAAACCCAAGACTGTTCTTGATCATCAAGAACAACCAGGCCAAAAAACCCAAGAAACCAATTCTATTCATAACACCATGAGGCCTCAAGAAGAACCCAAGAAGCTTTCAAATGGTTCTTTGGTGAAGAAGGAGAAAGCTGTCAAGTATAGAGAGTGTAGGAAGAATCACGCCGCGAACATCGGTGGTTATGCCGTCGACGGTTGTCGAGAATTCATGGCTGCTGGAGAAGAAGGAACGAGCGCCGCCCTAAAGTGTGCCGCTTGTAGTTGCCACAGGAACTTCCATAAGAGGGAGGTGGAGAACGAAGGTTTATGCGATTGTTCGTCGATTTCGACCACTAGGAAATGA 396 0.4596 MPTSSSSIHLSCQFNRKPKTVLDHQEQPGQKTQETNSIHNTMRPQEEPKKLSNGSLVKKEKAVKYRECRKNHAANIGGYAVDGCREFMAAGEEGTSAALKCAACSCHRNFHKREVENEGLCDCSSISTTRK* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00123 131 Pfam ZF-HD protein dimerisation region 63 115 IPR006456 -
Eupl05g00123 131 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Eupl05g00123 131 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 114 IPR006456 -
Eupl05g00123 131 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 118 - -
Eupl05g00123 131 MobiDBLite consensus disorder prediction 25 42 - -
Eupl05g00123 131 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00123 Eupl-Chr5 3082092 3082952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00123 61 129 Zinc finger-homeobox gene family AT3G28917 68.571 5.92e-31 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Eupl05g00123 ZF-HD_dimer 7.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00123 - - msin:131250560 199.904