Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00116 ATGGATGAAGCTCTGGTTGCTAGGTACTGGTGTTACATGTGCTCACAAATGGTGAATCCAGTGATGGAAGTGGAAATCAAATGCCCATTTTGCGAAAGCGGTTTTCTGGAAGAAATGGATAGCAGAAGAGACCAGGATACTGAGGCGGGATCCGATCGAGCGCTCTCTCTTTGGGCTCCGATCCTGCTAGGCATGATAGGTAGTAGGCGCCGTCGAAGATCCAGAAGAGAATCAGATTCATCAGAAGAAGAAGAAGAAGAGGAAGAAGAAGCACAACGAGGAGAATTAGAGCAAGAGCGGGACCTTGAATCAATGCTTCGAAGGAGAAGAAGAAGCTCAGCTGCCATCCTCCATTTGCTTCAAGGCCTTCGTGCTGGGATTGTGTCCGAACCAGGGAATTCTGAAACTGAGAGGGAAAGAGAGCAAGAGCAAGAGCGTGTAATCCTGATCAATCCTTTCAACCAAGCCATAATTCTTCAAGGGTCCTTCGATGTGAACCAAACTCAAAACCAGAATCAGAGCGCTCCTGGCTCTTTGGGTGATTACCTGATTGGGCCTGGCTTGGATCTACTGCTGCAGCATTTAGCAGAAAATGATCCAAATAGATACGGAACTCCACCGGCACAGAAAGAGGCTGTTGAAGCGATGCCCACTGTCACAATTTCAGAGAATCTGCAGTGCTCGGTATGCTTGGATGATTTTGAGATCAGTGCAGAGGCAAAGGAGATGCCATGTAAGCATAAATTCCATGGTGGGTGCATTCTGCCATGGCTGGAGCTTCATAGTTCTTGCCCAGTTTGCAGGTTTCAGATGCCTGCTGATGATATACCAAAGGCTGACGCAGATGGGTCTGGGAATAATAGTAGTAGTAGGGTGGAGAGTAGTGGGGATGGTAGTGGTGGAGAAGGGGAAAATGGACAAGGGAGAAGGTTTTGGCTTCCAATCCCATGGCCTTTTAATGGGTTGTTTTCTTTATCAGGATCTCAGAGTGATGGCAGTTCACCCTCTCCACCACCACCACCAGCACCACCACCATCATCAGCGTCACAAACAGATGAGAATTGA 1065 0.4808 MDEALVARYWCYMCSQMVNPVMEVEIKCPFCESGFLEEMDSRRDQDTEAGSDRALSLWAPILLGMIGSRRRRRSRRESDSSEEEEEEEEEAQRGELEQERDLESMLRRRRRSSAAILHLLQGLRAGIVSEPGNSETEREREQEQERVILINPFNQAIILQGSFDVNQTQNQNQSAPGSLGDYLIGPGLDLLLQHLAENDPNRYGTPPAQKEAVEAMPTVTISENLQCSVCLDDFEISAEAKEMPCKHKFHGGCILPWLELHSSCPVCRFQMPADDIPKADADGSGNNSSSRVESSGDGSGGEGENGQGRRFWLPIPWPFNGLFSLSGSQSDGSSPSPPPPPAPPPSSASQTDEN* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00116 354 Coils Coil 71 102 - -
Eupl05g00116 354 SMART ring_2 227 267 IPR001841 -
Eupl05g00116 354 FunFam E3 ubiquitin-protein ligase RING1-like 194 274 - -
Eupl05g00116 354 MobiDBLite consensus disorder prediction 282 296 - -
Eupl05g00116 354 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Eupl05g00116 354 MobiDBLite consensus disorder prediction 278 354 - -
Eupl05g00116 354 SUPERFAMILY RING/U-box 215 273 - -
Eupl05g00116 354 MobiDBLite consensus disorder prediction 333 347 - -
Eupl05g00116 354 MobiDBLite consensus disorder prediction 72 101 - -
Eupl05g00116 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 274 IPR013083 -
Eupl05g00116 354 ProSiteProfiles Zinc finger RING-type profile. 227 268 IPR001841 -
Eupl05g00116 354 Pfam Ring finger domain 226 268 IPR001841 -
Eupl05g00116 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 76 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00116 Eupl-Chr5 2828032 2830485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00116 117 284 C3H Transcription Factor Family AT1G26800 36.047 1.89e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00116 - - msin:131227401 431.795